View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_222 (Length: 253)
Name: NF9913A_low_222
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_222 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 21055874 - 21056102
Alignment:
| Q |
25 |
tttatgtatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttcccta |
124 |
Q |
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| T |
21055874 |
tttatgcatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttcccta |
21055973 |
T |
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| Q |
125 |
tatgaatgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacct |
224 |
Q |
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| T |
21055974 |
tatgaatgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtgctccagtgatgcattgtatacct |
21056073 |
T |
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| Q |
225 |
ctatttttggagttgcggataagtttact |
253 |
Q |
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| T |
21056074 |
ctatttttggagttgcggataagtttact |
21056102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 26366084 - 26365866
Alignment:
| Q |
11 |
aatattgggtgttttttatgtatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccat |
110 |
Q |
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| T |
26366084 |
aatattgggtgttttttatttatctggtttagtccttgctgctttatgtgtctgattttttatgctggcacaatatgatctttactggcatttaccccat |
26365985 |
T |
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| Q |
111 |
ttctaatttccctatatgaatgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtga |
210 |
Q |
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| T |
26365984 |
ttctggtttatctatttgaatgatgttatttagttgtgtaataatttgttcattgataagtcgatgctttggattatgaatcaacaatgcagt--agtga |
26365887 |
T |
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| Q |
211 |
tgcattgtatacctctatttt |
231 |
Q |
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| T |
26365886 |
tgcattgtatacctctttttt |
26365866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 26363573 - 26363407
Alignment:
| Q |
34 |
ctggtttatttcttgctgctttatatatctaatttttt-atgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatg |
132 |
Q |
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|||||||| ||| ||||||||||| | ||| ||||||| |||| |||||||| ||| |||||| ||||||||||||||||| ||| |||| |||||| |
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| T |
26363573 |
ctggtttagttcctgctgctttatgtgtctgatttttttatgctggcactatgcgatctttactggcatttaccccatttctggtttatctatttgaatg |
26363474 |
T |
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| Q |
133 |
atattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatg |
199 |
Q |
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| T |
26363473 |
atattatttggttgtgtaataatttgttctttgataagtaacttctttggattgtgaaacaacaatg |
26363407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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