View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_231 (Length: 251)
Name: NF9913A_low_231
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_231 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10566757 - 10566517
Alignment:
| Q |
1 |
ttaactttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagaggtggaacagtataaatatttaga |
100 |
Q |
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| T |
10566757 |
ttaactttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagaggtggaacagtataaatatttaga |
10566658 |
T |
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| Q |
101 |
aacaaataatgatgcatgcttaaacaacacacataaatcacttgatatgtcctggtttccagaatcaagatttgtttccgagactgcaattcaaaacaga |
200 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566657 |
aacaaataatgatacatgcttaaacaacacatataaatcacttgatatgtcctggtttccagaatcaagatttgtttccgagactgcaattcaaaacaga |
10566558 |
T |
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| Q |
201 |
acagaaacattgtctacagttgtgtcttctgatgtccatct |
241 |
Q |
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||||||||||||||||||||||||||||||| || |||||| |
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| T |
10566557 |
acagaaacattgtctacagttgtgtcttctggtggccatct |
10566517 |
T |
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