View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_232 (Length: 251)
Name: NF9913A_low_232
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_232 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 40821721 - 40821517
Alignment:
| Q |
20 |
atctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgttct |
119 |
Q |
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| T |
40821721 |
atctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctct |
40821622 |
T |
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| Q |
120 |
ctgttctgttcattttgttttgctatttgttacaagttagtattgccctaactatcatcacatcatcctaatacataaaggacaccgaaactcttatctc |
219 |
Q |
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| T |
40821621 |
ctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagtacataaaggacactgaaactcttatctc |
40821522 |
T |
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| Q |
220 |
caaag |
224 |
Q |
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||||| |
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| T |
40821521 |
caaag |
40821517 |
T |
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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 20292116 - 20292311
Alignment:
| Q |
20 |
atctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgttct |
119 |
Q |
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| T |
20292116 |
atctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctct |
20292206 |
T |
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| Q |
120 |
ctgttctgttcattttgttttgctatttgttacaagttagtattgccctaactatcatcacatcatcctaatacataaaggacaccgaaactcttatctc |
219 |
Q |
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| T |
20292207 |
ctgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctc |
20292306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 20301393 - 20301451
Alignment:
| Q |
104 |
tgttcaaatatgttctctgttctgttcattttgttttgctatttgttacaagttagtat |
162 |
Q |
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| T |
20301393 |
tgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtat |
20301451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
36 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
111 |
Q |
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| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
| Q |
102 |
gttgttcaaatatgttctctgttctgttcattttgttttgctattt |
147 |
Q |
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| T |
135603 |
gttgttcaaatgtgttctctgttttgttaattttgttttgctattt |
135558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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