View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_235 (Length: 251)

Name: NF9913A_low_235
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_235
NF9913A_low_235
[»] chr6 (3 HSPs)
chr6 (2-242)||(26553233-26553473)
chr6 (16-242)||(26565052-26565278)
chr6 (22-238)||(26559491-26559707)
[»] chr1 (1 HSPs)
chr1 (16-242)||(50933491-50933717)
[»] chr8 (1 HSPs)
chr8 (48-183)||(45506613-45506748)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 26553473 - 26553233
Alignment:
Q  2 acatcatagtttgaaaacatgattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26553473 acatcatagtttgaaaacatgattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtga 26553374  T
Q  102 actgcatcattcagtgtcttcttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26553373 actgcatcattcagtgtcttcttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaatgacccttatgagtgtgc 26553274  T
Q  202 tatcattagtccccatacctttcatcgccttatacaacacc 242  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26553273 tatcattagtccccatacctttcatcgccttatacaacacc 26553233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 26565278 - 26565052
Alignment:
Q  16 aaacatgattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcag 115  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||     
T  26565278 aaacatgattgaacatctttgactaattattcggacccaaaagtgcgagaagaaaagccctatagttgccagatgtttcagagtgaactgcatcattcaa 26565179  T
Q  116 tgtcttcttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgctatcattagtcccc 215  Q
    ||||||||| |||||||| ||||||||||||||||| || | |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||     
T  26565178 tgtcttcttatatttcttggcatattcagctttgatgtatttcatatcaatctcagtccttgttacgatgacccttatgagtgtggtatcattagtccct 26565079  T
Q  216 atacctttcatcgccttatacaacacc 242  Q
    | ||||||||| |||||||||||||||    
T  26565078 aaacctttcattgccttatacaacacc 26565052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 26559707 - 26559491
Alignment:
Q  22 gattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcagtgtctt 121  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  26559707 gattgaacatctttgactaattattgggacccaaaagtgcgagaagaaaagccctatagttgccggatgtttcagagtgaactgcatcattcaatgtctt 26559608  T
Q  122 cttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgctatcattagtccccatacct 221  Q
    ||| ||||||||||||||||||| |||||| || | |||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| | ||||    
T  26559607 cttatatttctttgcatattcagttttgatgtatttcatatcaatctcagtccttgttacaatgacccttatgagtgtgtgatcattagtccctaaacct 26559508  T
Q  222 ttcatcgccttatacaa 238  Q
    ||||| |||||||||||    
T  26559507 ttcattgccttatacaa 26559491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 50933491 - 50933717
Alignment:
Q  16 aaacatgattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcag 115  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||  |||||||||||| ||||||||||||||||||||||||||||     
T  50933491 aaacatgattgaacatctttgactaatgattgggacccaaaagtgcaagaagaaaagtcctgtagttgccagatgtttcagagtgaactgcatcattcaa 50933590  T
Q  116 tgtcttcttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgctatcattagtcccc 215  Q
    |||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||  |||||||| |||||   ||||||||||||     
T  50933591 tgtctttttgtatttctttgcatattcagctttgatatattccatatcaatctcagtccttgttataattacccttatcagtgtatcatcattagtccct 50933690  T
Q  216 atacctttcatcgccttatacaacacc 242  Q
    | ||||||||| |||||||||||||||    
T  50933691 aaacctttcattgccttatacaacacc 50933717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 45506613 - 45506748
Alignment:
Q  48 ggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcagtgtcttcttgtatttctttgcatattcagctt 147  Q
    ||||| ||||||| |||||||||| ||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  45506613 ggacctaaaagtgagagaagaaaagccctgtagtggccagatgtttccgagtgaactgcatcattcagcgtcttcttgtatttctttagatattcagctt 45506712  T
Q  148 tgatatactgcatatcaatctcagtccttgttacaa 183  Q
    | ||||| || | ||| |||||| |||| |||||||    
T  45506713 ttatataatgtagatctatctcactcctggttacaa 45506748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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