View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_236 (Length: 250)
Name: NF9913A_low_236
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_236 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 20456130 - 20456360
Alignment:
| Q |
1 |
aaagtgttgattgatatgttgtttttcagacttctgagaggatattggatgctccgggcattgtggatgactattacctcaatttactggattggggaag |
100 |
Q |
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| T |
20456130 |
aaagtgttgattgatatgttgtttttcagacttctgagaggatattggatgctccagacattgtggatgattattacctcaatttactggattggggaag |
20456229 |
T |
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| Q |
101 |
tgccaatgttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacggttccacttcagaactcgttaccgttgatgatgaagatggc |
200 |
Q |
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| T |
20456230 |
tgccaatgttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacggttccacttcagaactcgttaccgttgatgatgaagatggc |
20456329 |
T |
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| Q |
201 |
cctatcacatctgtaagttgggctcctgatg |
231 |
Q |
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| T |
20456330 |
cctatcacatctgtaagttgggctccagatg |
20456360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 1632212 - 1632435
Alignment:
| Q |
8 |
tgattgatatgttgtttttcagacttctgagaggatattggatgctccgggcattgtggatgactattacctcaatttactggattggggaagtgccaat |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| | | | ||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
1632212 |
tgattgatatgttgtttttcagacttctgagaggacattggatgctccagacctagtggatgactattaccttaatttactggattggggaagcgccaat |
1632311 |
T |
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| Q |
108 |
gttcttgcaattggattaggaaacacagtgtatttatgggatgcatcaaacggttccacttcagaactcgttaccgttgatgatgaagatggccctatca |
207 |
Q |
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| T |
1632312 |
gttcttgcaatagcacttggaaacacagtgtatttgtgggatgcatcaaatggttctacttcagaacttgttactgtcgaagaagaagacggccctatca |
1632411 |
T |
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| Q |
208 |
catctgtaagttgggctcctgatg |
231 |
Q |
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| T |
1632412 |
cttctgtgagttgggctcctgatg |
1632435 |
T |
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