View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_24 (Length: 447)
Name: NF9913A_low_24
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 43041190 - 43040777
Alignment:
| Q |
18 |
catcaacgattacaaggaggatggtttcattgactgtggtcattctaatgaattatcaaacatgccgggagaaaaggagtttcaaaacaatcatggtaag |
117 |
Q |
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| T |
43041190 |
catcagcgattacaaggaggatggttttattgactgtggtcattctaatgaattatcaaatatgccgggagaaaaggagtttcaaaacaatcatggtaag |
43041091 |
T |
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| Q |
118 |
cgaaattagtgaactaaagttgtctctaattttttgttttctgaagcatgtatttt-cacctcagactgctcagtggaggcacatattacagttcctcta |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| |
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| T |
43041090 |
cgaaattagggaactaaagttgtctctaattttttgttttctgaagcatgtatttttcacctcagactgctcagtggaggcacatattacagctcttcta |
43040991 |
T |
|
| Q |
217 |
gctagttctgtttctgagtctccaccatccagaagcagtgatgtaaaagagcaacaacaaggagaatgccagagttcagataaatgtaattctcctaacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43040990 |
gctagttctgtttctgagtctccaccatccagaagcagtgatgtaaaagagcaacaacaaggagaatgccagagttcagataaatgtaattctcctaacc |
43040891 |
T |
|
| Q |
317 |
atcgatgccccatttgtagacttcatatttagtaactgcatgctatttaagcaacatattgatgtttacttaaaagtaagttttaatttggtgactctac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43040890 |
atcgatgccccatttgtagacttcatatttagtaactgcatgctatttaagcaacatattgatgtttacttaaaagtaagttttaatttggtgactctac |
43040791 |
T |
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| Q |
417 |
aatagagtgatgtc |
430 |
Q |
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||||||||| |||| |
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| T |
43040790 |
aatagagtgttgtc |
43040777 |
T |
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