View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_240 (Length: 250)

Name: NF9913A_low_240
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_240
NF9913A_low_240
[»] chr3 (3 HSPs)
chr3 (15-250)||(54454141-54454376)
chr3 (90-228)||(27990581-27990719)
chr3 (90-151)||(27703897-27703958)
[»] chr2 (6 HSPs)
chr2 (16-249)||(32463065-32463298)
chr2 (144-229)||(32208671-32208756)
chr2 (16-116)||(25966644-25966744)
chr2 (90-250)||(15343914-15344074)
chr2 (90-123)||(12753070-12753103)
chr2 (213-249)||(28527488-28527524)
[»] chr5 (2 HSPs)
chr5 (16-122)||(43451990-43452096)
chr5 (90-229)||(29598908-29599047)
[»] scaffold0009 (1 HSPs)
scaffold0009 (33-201)||(99483-99652)
[»] chr4 (1 HSPs)
chr4 (158-229)||(42458112-42458183)
[»] chr8 (1 HSPs)
chr8 (90-223)||(37340955-37341088)
[»] chr1 (1 HSPs)
chr1 (176-250)||(14912464-14912538)
[»] chr6 (1 HSPs)
chr6 (90-184)||(30145903-30145997)
[»] chr7 (1 HSPs)
chr7 (90-198)||(28769991-28770099)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 54454141 - 54454376
Alignment:
Q  15 atggacatcacaacacagacatggtctctgatacggtccaaacttcctgtcaactccaagtacccctgctttatgtcctcctcaacagcaatctcatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |  ||||||||||||| ||||||||||||    
T  54454141 atggacatcacaacacagacatggtctctgatacggtccaaacctcctgtcagctccaagtatccctgctctccgtcctcctcaacaacaatctcatcaa 54454240  T
Q  115 gggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtc 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  54454241 gggcctcctactttgatggcctcgggatatgaacatcctggtttggaagaatcttgcacggatgagagatgagataaaaccatctgaagtagccattgtc 54454340  T
Q  215 cgcctccacaccctgaatagcaggttgccccaactg 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  54454341 cgcctccacaccctgaatagcaggttgccccaactg 54454376  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 27990581 - 27990719
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagat 189  Q
    |||||||||||| ||||||||||||||||||||  || || |||  |||| |   |||| |||||||||||||||||| |||| |||||||||| |||||    
T  27990581 tcctcctcaacaacaatctcatcaagggcctcccgctctggtggtctcggcacccgaacctcctggtttggaagaatcatgcgtggatgagagacgagat 27990680  T
Q  190 aaaaccatctgaagtagcccttgtccgcctccacaccct 228  Q
    |||||||||||| ||| ||||  ||| ||||||||||||    
T  27990681 aaaaccatctgatgtatccctcttccacctccacaccct 27990719  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 27703897 - 27703958
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcctactttgatggcatcgggatatgaacatc 151  Q
    |||| |||| || ||||||||||||||||||||||||  |  ||| ||||||||||||||||    
T  27703897 tcctgctcagcaacaatctcatcaagggcctcctactcagcaggcctcgggatatgaacatc 27703958  T

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Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 32463065 - 32463298
Alignment:
Q  16 tggacatcacaacacagacatggtctctgatacggtccaaacttcctgtcaactccaagtacccctgctttatgtcctcctcaacagcaatctcatcaag 115  Q
    ||||||||||| || |||||||||||||||||||| |||| ||||| | ||  |||||||||||||||||| | |||||||||  ||||||||||| |||    
T  32463065 tggacatcacaccatagacatggtctctgatacggcccaaccttccggccagatccaagtacccctgctttctatcctcctcagaagcaatctcataaag 32463164  T
Q  116 ggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtcc 215  Q
    ||||||||||| || |||| ||||||| |||||||||||||||||||||||| || | |||||||||| |||||||| |||||| | |||  |    |||    
T  32463165 ggcctcctactctggtggcctcgggatttgaacatcctggtttggaagaatcatgtgtggatgagagacgagataaagccatctaatgtattctgcctcc 32463264  T
Q  216 gcctccacaccctgaatagcaggttgccccaact 249  Q
    ||||||||||||| | |||||||||| |||||||    
T  32463265 gcctccacaccctaagtagcaggttgacccaact 32463298  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 32208756 - 32208671
Alignment:
Q  144 tgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctg 229  Q
    ||||| |||||||||||||||||| |||| ||| |||||| ||||||||||||||||| ||| ||||  ||| ||||||| |||||    
T  32208756 tgaacctcctggtttggaagaatcatgcgtggaagagagacgagataaaaccatctgatgtatccctcttccacctccactccctg 32208671  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 25966744 - 25966644
Alignment:
Q  16 tggacatcacaacacagacatggtctctgatacggtccaaacttcctgtcaactccaagtacccctgctttatgtcctcctcaacagcaatctcatcaag 115  Q
    |||||||||||||| | ||||||||||||||||||  ||| ||| |   ||| |||||||||||||| | |   ||||||||| ||||||||||||||||    
T  25966744 tggacatcacaacatacacatggtctctgatacggctcaacctttcgaacaaatccaagtacccctgatctccatcctcctcagcagcaatctcatcaag 25966645  T
Q  116 g 116  Q
    |    
T  25966644 g 25966644  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 15344074 - 15343914
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagat 189  Q
    |||| |||| || ||||||||||||||||||| | || |  |||| || |||  || ||||||| || |||||||||| ||||  |||| |||||| |||    
T  15344074 tcctgctcatcaacaatctcatcaagggcctcttgctctagtggcctctggacctgtacatcctcgtctggaagaatcatgcgtcgatgtgagatgggat 15343975  T
Q  190 aaaaccatctgaagtagcccttgtccgcctccacaccctgaatagcaggttgccccaactg 250  Q
    ||||||||||||  || | |   | ||||||||||| |||||||||||   ||||||||||    
T  15343974 aaaaccatctgatatatctcagcttcgcctccacactctgaatagcagagagccccaactg 15343914  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 12753103 - 12753070
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcct 123  Q
    ||||||||| ||||||||||||||||||||||||    
T  12753103 tcctcctcatcagcaatctcatcaagggcctcct 12753070  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 28527488 - 28527524
Alignment:
Q  213 tccgcctccacaccctgaatagcaggttgccccaact 249  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  28527488 tccgccaccacaccctgaatagtaggttgccccaact 28527524  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 43451990 - 43452096
Alignment:
Q  16 tggacatcacaacacagacatggtctctgatacggtccaaacttcctgtcaactccaagtacccctgctttatgtcctcctcaacagcaatctcatcaag 115  Q
    ||||||| |||||| | |||||||||||||||||| |||| |||||   || ||| |||||||| ||||||   |||||||||||||||||||||||||     
T  43451990 tggacataacaacatacacatggtctctgatacggcccaaccttccccccagctctaagtacccatgcttttcatcctcctcaacagcaatctcatcaat 43452089  T
Q  116 ggcctcc 122  Q
    |||||||    
T  43452090 ggcctcc 43452096  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 29599047 - 29598908
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagat 189  Q
    ||||||||| ||||| |||||||||||||||||| || |  |||  |||||| ||||||||||||   |||||||||| | || ||||| ||| ||  ||    
T  29599047 tcctcctcagcagcagtctcatcaagggcctcctgctcttgtggtctcgggacatgaacatcctgcactggaagaatcatacgtggatgtgaggtgttat 29598948  T
Q  190 aaaaccatctgaagtagcccttgtccgcctccacaccctg 229  Q
    || | ||||||| ||| ||||  |||||||||||||||||    
T  29598947 aatatcatctgatgtatccctcttccgcctccacaccctg 29598908  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 99652 - 99483
Alignment:
Q  33 acatggtctctgatacggtccaaacttcctgtcaactccaagtacccc-tgctttatgtcctcctcaacagcaatctcatcaagggcctcctactttgat 131  Q
    ||||||| |||||||||| |||| ||||| | ||| |||||||||||| |||| |   || | ||||||| |||||||||||||||| |  | || |||     
T  99652 acatggtatctgatacggcccaaccttccagccaaatccaagtaccccctgctctccatcttgctcaacaacaatctcatcaagggcattatgctctgac 99553  T
Q  132 ggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctga 201  Q
    | | | ||||  |||||||||| || |||||||||| |||| ||||| ||||||| ||||||||||||||    
T  99552 gaccttgggacctgaacatcctcgtctggaagaatcatgcgtggatgtgagatgatataaaaccatctga 99483  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 42458112 - 42458183
Alignment:
Q  158 tggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctg 229  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| ||  ||||  |||||||||||||||||    
T  42458112 tggaagaatcatgcgcggatgagagacgcgataaaaccatctgatgtgtccctcttccgcctccacaccctg 42458183  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 37341088 - 37340955
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagat 189  Q
    ||||||||| ||  |||||||||||||||||||| || || |||| |||  |  ||||| || ||||||||||||| | |||| ||||||||||  ||||    
T  37341088 tcctcctcagcaataatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacaagat 37340989  T
Q  190 aaaaccatctgaagtagcccttgtccgcctccac 223  Q
    |||||||| ||| ||| ||||  |||||| ||||    
T  37340988 aaaaccatatgatgtatccctcttccgcccccac 37340955  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 14912538 - 14912464
Alignment:
Q  176 atgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctgaatagcaggttgccccaactg 250  Q
    |||||||||||||||||||||||| | ||||||    | ||||||||||||||||||||||  || |||||||||    
T  14912538 atgagagatgagataaaaccatctaatgtagcctgccttcgcctccacaccctgaatagcaaattcccccaactg 14912464  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 30145997 - 30145903
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagat 184  Q
    ||||||||| |||||||||||||||||||||||| || || |||| |||  |    ||| |  ||||||||||||||| |||| |||||||||||    
T  30145997 tcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgaaaccataaccttatggtttggaagaatcatgcgtggatgagagat 30145903  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 28770099 - 28769991
Alignment:
Q  90 tcctcctcaacagcaatctcatcaagggcctcctactttgatggcatcgggatatgaacatcctggtttggaagaatcttgcgcggatgagagatgagat 189  Q
    |||| |||| |||| |||||||||||||| |||| ||  | |||| |||||| ||||||| ||| |||| |||| ||  |||| ||||| ||||||  ||    
T  28770099 tcctgctcagcagcgatctcatcaagggcatccttctcgggtggcctcgggacatgaacaacctcgtttagaagtatgatgcgtggatgtgagatggaat 28770000  T
Q  190 aaaaccatc 198  Q
    |||||||||    
T  28769999 aaaaccatc 28769991  T

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