View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_241 (Length: 250)
Name: NF9913A_low_241
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_241 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 39370104 - 39369911
Alignment:
| Q |
12 |
ggttccaatcaggatcaactacaatcacacgatctgctcttgtaagtgtcaatcctatactaccaaccttagatgtcaagagaaatattggaggtccagc |
111 |
Q |
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| T |
39370104 |
ggttccaatcaggatcaactacaataacacgatctgctcttgtaagtgtcaatcctataccaccaaccttagatgtcaagagaaatattggaggtccagc |
39370005 |
T |
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| Q |
112 |
aacatcttggaaatcctgaaatcaaattagcagttagacaaggaaaagtaacacttggaggatttacaaaaattattgaatatgcaacatactt |
205 |
Q |
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| T |
39370004 |
aacatcttggaaatcctgaaatcaaattagcagttagacaaggaaaagtaacacttggaggatttacaaaaattattgaatatgcaacatactt |
39369911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 39356119 - 39355900
Alignment:
| Q |
12 |
ggttccaatcaggatcaactacaatcacacgatctgctcttgtaagtgtcaatcctatactaccaaccttagatgtcaagagaaatattggaggtccagc |
111 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||| | |||||||| ||||||||||||| |||| | |
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| T |
39356119 |
ggttccaagcaggatcaacaacaatcacacgatctgctcttgtaagtgtcagtcctaaaccaccaacttgagatgtcagcagaaatattggagctccaac |
39356020 |
T |
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| Q |
112 |
aacatcttggaaatcctgaaatcaaattagcagttagacaaggaaaagtaacacttggaggatttacaaaaattattgaatatgcaacatacttacatca |
211 |
Q |
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| T |
39356019 |
accatcttgaaaatcctgaaatcaaattaacagttagacgaggaaaaatgacaattggaggatttaaaaccgttactgaatatgcaaaatacttacatca |
39355920 |
T |
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| Q |
212 |
acaaatctttttctgtcaca |
231 |
Q |
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|||| | || |||||||||| |
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| T |
39355919 |
acaatttttattctgtcaca |
39355900 |
T |
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