View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_242 (Length: 250)
Name: NF9913A_low_242
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_242 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 28907845 - 28908078
Alignment:
| Q |
18 |
gacatcaaatcattcatccataagaacaattacaagaaaaggatagaaatttcaattagg-atgttgtgttaccttctcacatctagtgcaacaaatgga |
116 |
Q |
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| T |
28907845 |
gacatcaaatcattcatccataagaacaattacaagaaaaggatagaaatttaaattagggatgttgtgttaccttctcacatctagtgcaacaaatgga |
28907944 |
T |
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| Q |
117 |
ataagtcgctcggaaagaagttgtgcaatgatctgaaaataacaaaggtaaattccagcacacttatgtaaactaactaagcaaaccaaaatatagagaa |
216 |
Q |
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| T |
28907945 |
ataagtcgctcggaaagaagttgtgcaatgatctgaaaataacaaaggtaaattccagcacatttatgtaaactaactaagcaaaccaaaatatagagaa |
28908044 |
T |
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| Q |
217 |
tttacctggccaactcgtccaaatccacaaataa |
250 |
Q |
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| T |
28908045 |
tttacctggccaactcgtccaaatccacaaataa |
28908078 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 11848370 - 11848293
Alignment:
| Q |
85 |
gttaccttctcacatctagtgcaacaaatggaataagtcgctcggaaagaagttgtgcaatgatctgaaaataacaaa |
162 |
Q |
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| T |
11848370 |
gttaccttcgcacatctagtgcgacaaaaggaataagtcgctcagaaagaagttgtgcaatgatctgagaataacaaa |
11848293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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