View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_243 (Length: 250)

Name: NF9913A_low_243
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_243
NF9913A_low_243
[»] chr3 (13 HSPs)
chr3 (23-250)||(13928701-13928934)
chr3 (31-250)||(13926303-13926528)
chr3 (61-208)||(22924345-22924491)
chr3 (69-247)||(14481076-14481253)
chr3 (61-249)||(16359030-16359217)
chr3 (61-249)||(19185343-19185530)
chr3 (101-234)||(27869979-27870111)
chr3 (69-247)||(17791373-17791550)
chr3 (69-247)||(19099813-19099990)
chr3 (69-125)||(19908193-19908249)
chr3 (156-249)||(21975776-21975869)
chr3 (156-249)||(21998207-21998300)
chr3 (156-249)||(22160371-22160464)
[»] scaffold0166 (1 HSPs)
scaffold0166 (61-235)||(1745-1918)
[»] scaffold0145 (1 HSPs)
scaffold0145 (61-247)||(13048-13234)
[»] chr5 (5 HSPs)
chr5 (61-235)||(24759251-24759424)
chr5 (61-247)||(23960362-23960547)
chr5 (65-211)||(17458416-17458561)
chr5 (61-247)||(13937407-13937594)
chr5 (69-247)||(24831475-24831652)
[»] chr4 (10 HSPs)
chr4 (61-247)||(16284483-16284669)
chr4 (61-250)||(11556408-11556596)
chr4 (69-217)||(18556401-18556548)
chr4 (61-249)||(15872299-15872486)
chr4 (61-247)||(11097844-11098030)
chr4 (61-249)||(12229374-12229561)
chr4 (61-213)||(18220279-18220430)
chr4 (61-242)||(30275507-30275687)
chr4 (61-249)||(15889891-15890078)
chr4 (197-249)||(13266511-13266563)
[»] chr7 (5 HSPs)
chr7 (61-250)||(13477109-13477297)
chr7 (109-247)||(22614555-22614692)
chr7 (61-147)||(37945371-37945457)
chr7 (197-250)||(11655722-11655775)
chr7 (61-180)||(20026464-20026582)
[»] chr6 (4 HSPs)
chr6 (61-248)||(8403244-8403430)
chr6 (94-247)||(7682055-7682207)
chr6 (69-217)||(19546825-19546972)
chr6 (111-247)||(9191564-9191699)
[»] chr8 (1 HSPs)
chr8 (61-250)||(29294344-29294532)
[»] scaffold1001 (1 HSPs)
scaffold1001 (95-247)||(1541-1692)
[»] chr2 (4 HSPs)
chr2 (77-215)||(18986912-18987049)
chr2 (61-247)||(23655908-23656093)
chr2 (197-250)||(44585955-44586008)
chr2 (61-146)||(24786637-24786722)
[»] scaffold0094 (1 HSPs)
scaffold0094 (66-219)||(4185-4337)
[»] scaffold0048 (2 HSPs)
scaffold0048 (61-180)||(52578-52696)
scaffold0048 (61-172)||(87134-87244)
[»] scaffold0737 (1 HSPs)
scaffold0737 (61-247)||(3119-3303)
[»] scaffold0290 (1 HSPs)
scaffold0290 (130-234)||(13660-13763)
[»] chr1 (1 HSPs)
chr1 (200-247)||(51626479-51626526)
[»] scaffold0118 (1 HSPs)
scaffold0118 (101-249)||(10616-10763)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 13928934 - 13928701
Alignment:
Q  23 catctctctcatcatcatctatatatcgatcattctcctaac------ttcattctattttaaagttattaccccatcttatcgttactttcgacttcag 116  Q
    |||| |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13928934 catcactctcatcatcatctatatatcgatcattctcctaaccttaacttcattctattttaaagttattaccccatcttatctttactttcgacttcag 13928835  T
Q  117 caactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  13928834 caactttcctcgccaagacttcattataattttaaggagttattctctcgataccggtcgttatatttatcgtcaaatattataactattacctcttatc 13928735  T
Q  217 ttcattcctattcatcttgctctcttctaattga 250  Q
    ||| |||||||||||||| |||||||||||||||    
T  13928734 ttccttcctattcatctttctctcttctaattga 13928701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 13926528 - 13926303
Alignment:
Q  31 tcatcatcatctatatatcgatcattctcctaac------ttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttc 124  Q
    ||||| ||||||||||||||||| ||||| ||||      ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13926528 tcatcgtcatctatatatcgatccttctcttaaccttaacttcattctattttaaagttattaccccatcttatcgttacttttgacttcagcaactttc 13926429  T
Q  125 ctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcc 224  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||  ||||    
T  13926428 ctcgctaagacttcattataattttaaggagttattctcacgatatcggtcgttatatttatcgtcaaatattataactattacctcttatcttacttcc 13926329  T
Q  225 tattcatcttgctctcttctaattga 250  Q
    |||| |||||||||||||||||||||    
T  13926328 tatttatcttgctctcttctaattga 13926303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 22924345 - 22924491
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||||| | ||||||| ||||||| ||||||||||||||    
T  22924345 taacttcattctattttaaagttattatctcatcttatagttactttcgacttcaacaactttcctcactaagactttattataa-tttaaggagttatt 22924443  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattac 208  Q
    ||||||| | ||||| ||||  |||| |||||| | ||||||||||||    
T  22924444 ctctcgatatcggtctttattattatcgtcaaacattataactattac 22924491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 14481253 - 14481076
Alignment:
Q  69 ttctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgac 168  Q
    ||||| |||||||||| |  | || |||||| ||| ||| ||||||| ||||||||||| | |||||| ||||||||||  ||||  ||||||||||||     
T  14481253 ttctaatttaaagttactgtctcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattc-aaggttttattctctcgat 14481155  T
Q  169 accggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||  ||| ||||  |||| |||||  | |||||||||||||||||||| || |||| ||||||||| ||||||||||||    
T  14481154 actagtcattattattatcgtcaaccattataactattacctcttatcctctttcccattcatctttctctcttctaat 14481076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 16359217 - 16359030
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| || ||| ||||||||||||| | |||  ||||  |||||| ||| |||| |||||||||| | |||||||||||||||||  |||   |||||    
T  16359217 taacttaatcctaatttaaagttattatctcattctatcagtacttttgacatcagaaactttcctcactaagacttcattataattc-aagattttatt 16359119  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    |||||||  ||||| |||||  |||| ||||||   ||||||||||| | ||||||  | |||||| ||||||||||||| ||||||||    
T  16359118 ctctcgatgccggttgttattattatcgtcaaactttataactattatcgcttatccgctttcctactcatcttgctctcctctaattg 16359030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 19185343 - 19185530
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| || ||| ||| ||||||||| | ||| |||||  |||||| ||||| || |||||||||| | |||||||||||| ||||  |||   |||||    
T  19185343 taacttaatcctaatttgaagttattatctcattttatcagtacttttgactttagaaactttcctcactaagacttcattacaattc-aagattttatt 19185441  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    ||||| | ||| || |||||  |||| |||||| | ||||||||||||| ||||||  | |||||| | ||||||||||||||||||||    
T  19185442 ctctcaataccagttgttattattatcgtcaaacattataactattaccgcttatccgctttcctacttatcttgctctcttctaattg 19185530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 27870111 - 27869979
Alignment:
Q  101 ttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaatactata 200  Q
    |||||||| ||||||  || || |||| |||||||||||||||||||  ||||  |||||||||||| ||||||  ||||  |||| |||||| | |||     
T  27870111 ttactttcaacttcataaatttccctcaccaagacttcattataattc-aaggttttattctctcgataccggttattattattatcgtcaaacattatc 27870013  T
Q  201 actattacctcttatcttcattcctattcatctt 234  Q
    |||||||||||||||||   ||||||||||||||    
T  27870012 actattacctcttatctggtttcctattcatctt 27869979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 247
Target Start/End: Original strand, 17791373 - 17791550
Alignment:
Q  69 ttctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgac 168  Q
    ||||| ||||||||| ||| | || |||||| ||| |||||||||||||||||||||| || ||||||  |||| || || ||||  | ||||  ||||     
T  17791373 ttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcctagctaagactatattacaa-ttcaagggttcattccttcgat 17791471  T
Q  169 accggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||  ||||||||  |||| |||||    ||||||||||| |||| ||| ||  ||||||||||||||||||||||||||    
T  17791472 actagtcgttattattatcgtcaatcgttataactattatctctcatcctctctcctattcatcttgctctcttctaat 17791550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 247
Target Start/End: Original strand, 19099813 - 19099990
Alignment:
Q  69 ttctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgac 168  Q
    ||||| ||||||||| ||| | || |||||| ||| |||||||||||||||||||||| || ||||||  |||| || || ||||  | ||||  ||||     
T  19099813 ttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcctagctaagactatattacaa-ttcaagggttcattccttcgat 19099911  T
Q  169 accggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||  ||||||||  |||| |||||    ||||||||||| |||| ||| ||  ||||||||||||||||||||||||||    
T  19099912 actagtcgttattattatcgtcaatcgttataactattatctctcatcctctctcctattcatcttgctctcttctaat 19099990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 19908249 - 19908193
Alignment:
Q  69 ttctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcc 125  Q
    ||||| ||||||||||||| | || |||||||||||||||||  |||||||||||||    
T  19908249 ttctaatttaaagttattatctcaccttatcgttactttcgatgtcagcaactttcc 19908193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 21975776 - 21975869
Alignment:
Q  156 ttattctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    |||||||||||| |||||| |||||  ||||  ||||| | ||||  ||||||| ||||||  | |||||| ||||||||||||||| ||||||    
T  21975776 ttattctctcgataccggttgttattattatcatcaaacattatatttattaccgcttatccgctttcctactcatcttgctctcttttaattg 21975869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 21998207 - 21998300
Alignment:
Q  156 ttattctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    |||||||||||| |||||| |||||  ||||  ||||| | ||||  ||||||| ||||||  | |||||| ||||||||||||||| ||||||    
T  21998207 ttattctctcgataccggttgttattattatcatcaaacattatatttattaccgcttatccgctttcctactcatcttgctctcttttaattg 21998300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 22160371 - 22160464
Alignment:
Q  156 ttattctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    |||||||||||| |||||| |||||  |||| |||||| | ||||  ||||  | ||||||  | |||||| ||||||||||||||||||||||    
T  22160371 ttattctctcgataccggttgttattattatcgtcaaacattatatttattttcgcttatccgccttcctactcatcttgctctcttctaattg 22160464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 1745 - 1918
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||    
T  1745 taacctcattctattttaaagttattatctcatcttatcgttactttcgacttcagcaactttcctcagtaagacttcattataa-tttaaggagttatt 1843  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttg 235  Q
    ||||||| || ||||||||   |||| |||||| | ||||||||||||||||||||||| |||||||||||||||    
T  1844 ctctcgatacaggtcgttaatattatcgtcaaaaattataactattacctcttatcttccttcctattcatcttg 1918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 61 - 247
Target Start/End: Original strand, 13048 - 13234
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||||| | || |||||||||||||||||||||||||||    
T  13048 taacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattataattttaaggagttatt 13147  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||||||| | | ||||||||||||||  ||||| | ||||| | |||| |||||||||  ||||||| |||||||||||||||||||    
T  13148 ctctcgatatcagtcgttatatttatcatcaaacattataaatgttacgtcttatcttatttcctatacatcttgctctcttctaat 13234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 24759251 - 24759424
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||    
T  24759251 taacctcattctattttaaagttattatctcatcttatcgttactttcgacttcagcaactttcctcagtaagacttcattataa-tttaaggagttatt 24759349  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttg 235  Q
    ||||||| || ||||||||   |||| |||||| | ||||||||||||||||||||||| |||||||||||||||    
T  24759350 ctctcgatacaggtcgttaatattatcgtcaaaaattataactattacctcttatcttccttcctattcatcttg 24759424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 23960547 - 23960362
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||| ||||||||||||| | || |||| | ||||||| ||| |||||||||||||||||||| ||| |||||||| || ||||  |||||    
T  23960547 taacttcattctaatttaaagttattatctcaccttaccattacttttgacgtcagcaactttcctcgccaaaactccattataactt-aaggtcttatt 23960449  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
     |||||| ||||||||||||| ||||  |||||   ||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  23960448 ttctcgataccggtcgttataattatcatcaaactttataactattacctcttatcttccttcttattcatcttgctctcttctaat 23960362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 17458416 - 17458561
Alignment:
Q  65 ttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctct 164  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||| | |||| ||| || | || |||||||||||| |||||| |||||||||||    
T  17458416 ttcattctattttaaagttattatctcatcttatagttactttcgactttaacaaccttcttcactaaaacttcattataa-tttaagaagttattctct 17458514  T
Q  165 cgacaccggtcgttatatttattgtcaaatactataactattacctc 211  Q
    ||| | || |||||||  ||||||||||||| ||||| |||||||||    
T  17458515 cgatatcgatcgttattattattgtcaaatattataattattacctc 17458561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 247
Target Start/End: Original strand, 13937407 - 13937594
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||| ||||||||||||| | || |||||| ||||||||||||||   ||||| |||| | ||||||||||||||| || ||||  |||||    
T  13937407 taacttcattctaatttaaagttattatctcaccttatcattactttcgacttcgaaaacttccctcactaagacttcattataa-ttcaaggttttatt 13937505  T
Q  161 ctctcg-acaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcat-cttgctctcttctaat 247  Q
      |||| | | ||||||||||  ||||  ||||||| |||||||||||||||||| | || ||||||||||| ||||||||||||||||    
T  13937506 tcctcgaatatcggtcgttattattatcatcaaatagtataactattacctcttaccctctttcctattcatccttgctctcttctaat 13937594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 24831652 - 24831475
Alignment:
Q  69 ttctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgac 168  Q
    ||||| |||||||||| || | || |||||| ||| ||| ||||||| |||||||| || | |||||| ||||||||||  ||||  ||||||||||||     
T  24831652 ttctaatttaaagttactatctcaccttatcattaattttgacttcaacaactttcttcactaagactacattataattc-aaggttttattctctcgat 24831554  T
Q  169 accggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||  ||| ||||  ||||||||||  | |||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  24831553 actagtcattattattattgtcaaccattataactattacctcttatcctctttcctattcatcttactctcttctaat 24831475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 16284669 - 16284483
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||||| | || |||||||||||||||||||||||||||    
T  16284669 taacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattataattttaaggagttatt 16284570  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||||||| | | ||||||||||||||   |||| | ||||| | |||| |||||||||  ||||||| |||||||||||||||||||    
T  16284569 ctctcgatatcagtcgttatatttatcaacaaacattataaattttacgtcttatcttatttcctatacatcttgctctcttctaat 16284483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 11556408 - 11556596
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||| ||||||||||||| | || | |||| ||| ||||||||||||||||||||||| | |||||| |||||||| || ||||  | |||    
T  11556408 taacttcattctaatttaaagttattatctcaccatatcattaatttcgacttcagcaactttcctcactaagactacattataa-ttcaaggtttcatt 11556506  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattga 250  Q
    ||||| | ||  ||||||||  |||| |||||  | ||||| |||||||||||||| || |||||||||||||||| |||||||||||||    
T  11556507 ctctcaatactagtcgttattattatcgtcaaccattataattattacctcttatcctctttcctattcatcttgccctcttctaattga 11556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 18556548 - 18556401
Alignment:
Q  69 ttctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgac 168  Q
    ||||| ||||||||||||| | ||  ||||| |||||||||||||||  ||||| |||| ||||||||||||||||| || ||||  | ||||||||||     
T  18556548 ttctaatttaaagttattatcgcactttatcattactttcgacttcataaacttccctcaccaagacttcattataa-ttcaaggtttcattctctcgat 18556450  T
Q  169 accggtcgttatatttattgtcaaatactataactattacctcttatct 217  Q
    ||| ||| ||||  |||| |||||| | |||||||||||||||||||||    
T  18556449 accagtcattattattatcgtcaaacattataactattacctcttatct 18556401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 15872486 - 15872299
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| || ||| ||||||||||||| | |||  ||||  |||||| ||  |||| |||||||||| | ||| |||||||||||||  |||   |||||    
T  15872486 taacttaatcctaatttaaagttattatctcattctatcagtacttttgatatcagaaactttcctcactaaggcttcattataattc-aagattttatt 15872388  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    |||||||  ||||| |||||  |||| |||||| | ||||||||||| | ||||||| | |||||| ||||||||||||||||||||||    
T  15872387 ctctcgatgccggttgttattattatcgtcaaacattataactattatcgcttatctgctttcctactcatcttgctctcttctaattg 15872299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 11098030 - 11097844
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcat-tataattttaaggagttat 159  Q
    ||||||| ||||| ||||||||||||| | || |||||| ||| ||| |||||||| |||||||||| | |||||| ||  |||||||  ||||  | ||    
T  11098030 taacttcgttctaatttaaagttattatctcaccttatcattaattttgacttcagaaactttcctcactaagactacaaatataattc-aaggtttcat 11097932  T
Q  160 tctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    |||||||| ||  ||||||||  |||| || ||  | ||||| |||||||||||||| || ||||||||||||||||||||| |||||    
T  11097931 tctctcgatactagtcgttattgttatcgtaaaccattataattattacctcttatcctctttcctattcatcttgctctctcctaat 11097844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 12229374 - 12229561
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| || ||| ||| ||||||||| | ||  |||||  |||||||| |||||| ||||||| || | ||||||||| |||||||  |||   |||||    
T  12229374 taacttaatcctaatttgaagttattatctcactttatcagtactttcggcttcagaaactttcttcactaagacttcagtataattc-aagattttatt 12229472  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
     | || | |||||| |||||  |||| |||||| | ||||||||||||| |||||| || |||||| ||||||||||||||||||||||    
T  12229473 ttttcaataccggttgttattattatcgtcaaacattataactattaccgcttatcctctttcctactcatcttgctctcttctaattg 12229561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 18220430 - 18220279
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||| | ||||||||||| | || |||||| ||| ||||||||||| ||||||| ||| | |||||| |||||||| || ||||  | |||    
T  18220430 taacttcattctaatataaagttattatctcaccttatcattaatttcgacttcaacaacttttctcactaagactacattataa-ttcaaggtttcatt 18220332  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctctt 213  Q
    ||||||| ||  ||||||||  |||||| |||  | |||||||||||||||||    
T  18220331 ctctcgatactagtcgttattattattgacaaccattataactattacctctt 18220279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 30275687 - 30275507
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||| |||||||||||||   || |||||| ||||||||||| ||| ||||||||| | | || |||||||||| |||||| ||  ||| |    
T  30275687 taacttcattctaatttaaagttattatttcaccttatcattactttcgacgtcatcaactttcc-cactaaaacttcattat-attttagggttttaat 30275590  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactata-actattacctcttatcttcattcctattcatcttgctctctt 242  Q
     |||||  ||| ||||||||  |||| |||||| | |||| ||||||| ||||||||||| ||  |||||||||| |||||||    
T  30275589 atctcgttaccagtcgttattattatcgtcaaacattatatactattatctcttatcttcttttttattcatcttactctctt 30275507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 15890078 - 15889891
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| || ||| ||||||||||||| | |||  ||||  |||||| ||| |||| |||||||||| | ||| |||||||||||||  |||   |||||    
T  15890078 taacttaatcctaatttaaagttattatctcattctatcagtacttttgacatcagaaactttcctcactaaggcttcattataattc-aagattttatt 15889980  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    |||||||  ||||| |||||  ||||  ||||| | ||||||||||| | ||||||    |||||| ||||||||||||||||||||||    
T  15889979 ctctcgatgccggttgttattattatcatcaaacattataactattatcgcttatccggtttcctactcatcttgctctcttctaattg 15889891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 13266511 - 13266563
Alignment:
Q  197 tataactattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    |||||| |||||| ||||||| |||||||| | ||||||||||||| ||||||    
T  13266511 tataaccattaccgcttatctgcattcctacttatcttgctctcttataattg 13266563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 250
Target Start/End: Complemental strand, 13477297 - 13477109
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||| |||||  ||||| |||||| | || |||||| ||| ||| ||||||||||||||||||| | |||||| ||||||||||| ||||  | |||    
T  13477297 taacttcgttctaaattaaacttattatctcaccttatcattaatttggacttcagcaactttcctcactaagactacattataattt-aaggtttcatt 13477199  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattga 250  Q
    ||||||| ||  ||| ||||  ||||||||||  | ||||||||||| ||||| || || ||||||||||||||||||||||||||||||    
T  13477198 ctctcgatactagtcattattattattgtcaaccattataactattatctcttgtcctctttcctattcatcttgctctcttctaattga 13477109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 22614692 - 22614555
Alignment:
Q  109 gacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaatactataactattac 208  Q
    ||||| ||||||||||||| | |||||| ||||||||||  ||||  | |||||||||| ||  ||| ||||  |||| || ||  | ||||||||||||    
T  22614692 gactttagcaactttcctcactaagactacattataattc-aaggtttcattctctcgatactagtctttattattatcgttaaccattataactattac 22614594  T
Q  209 ctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    |||||||| || |||||||||||||||||||||||||||    
T  22614593 ctcttatcctctttcctattcatcttgctctcttctaat 22614555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 37945457 - 37945371
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataatt 147  Q
    |||||| ||||||  |||||||||||| | || ||| || |||||||| |||||||||||||||||| | |||||||||||||||||    
T  37945457 taacttgattctaaattaaagttattatctcaccttttcattactttcaacttcagcaactttcctcactaagacttcattataatt 37945371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 11655722 - 11655775
Alignment:
Q  197 tataactattacctcttatcttcattcctattcatcttgctctcttctaattga 250  Q
    |||||||||||||||||||| || ||||||||||||||| ||| ||||||||||    
T  11655722 tataactattacctcttatcctctttcctattcatcttggtcttttctaattga 11655775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 20026464 - 20026582
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||| |||| |||||||| | || | |||| ||| ||||||||||| ||||||||||| | | |||| |||| ||| || ||||  |||||    
T  20026464 taacttcattctaatttagagttattatctcaccctatcattaatttcgacttcaacaactttcctcactacgactccattctaa-ttaaaggttttatt 20026562  T
Q  161 ctctcgacaccggtcgttat 180  Q
    ||||||| || |||| ||||    
T  20026563 ctctcgatactggtcattat 20026582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 8403430 - 8403244
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| || ||| ||||||||||||| | ||  |||||  |||||| |||||||| |||||||||| | ||| |||||| ||||||  |||   |||||    
T  8403430 taacttaatcctaatttaaagttattatctcactttatcagtacttttgacttcagaaactttcctcactaaggcttcatcataattc-aagattttatt 8403332  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaatt 248  Q
    |||| || |||||| |||||  ||||||||||| | ||||||||||||| ||||||  | |||||| |||||||| ||||||||||||    
T  8403331 ctcttgataccggttgttatcattattgtcaaacattataactattaccgcttatccgctttcctactcatcttgatctcttctaatt 8403244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 7682207 - 7682055
Alignment:
Q  94 cttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaa 193  Q
    |||||| ||| ||| ||||||| ||||||||||| | |||||| ||||||||||  ||||  |||||||||||| ||  ||| ||||  |||  |||||     
T  7682207 cttatcattaattttgacttcaacaactttcctcactaagactacattataattc-aaggttttattctctcgatactagtcattattattaacgtcaat 7682109  T
Q  194 tactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
     | |||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  7682108 cattataactattacctcttatcctctttcctattcatcttactctcttctaat 7682055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 19546972 - 19546825
Alignment:
Q  69 ttctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgac 168  Q
    ||||| ||||||||||||| | ||  | ||| |||||||||||||||  ||||| |||| ||||||||||||||||| || ||||  | ||||||||||     
T  19546972 ttctaatttaaagttattatcgcacttaatcattactttcgacttcataaacttccctcaccaagacttcattataa-ttcaaggtttcattctctcgat 19546874  T
Q  169 accggtcgttatatttattgtcaaatactataactattacctcttatct 217  Q
    ||| ||| ||||  |||| |||||| | |||||||||||||||||||||    
T  19546873 accagtcattattattatcgtcaaacattataactattacctcttatct 19546825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 9191564 - 9191699
Alignment:
Q  111 cttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaatactataactattacct 210  Q
    ||||||||||||||||| | | |||||| ||||||||  ||||  || ||||||||| |||||| |||||  | || | | ||   |||||||| || ||    
T  9191564 cttcagcaactttcctcactacgacttcgttataattc-aaggttttgttctctcgataccggttgttattatcatcgactaaccttataactaatatct 9191662  T
Q  211 cttatcttcattcctattcatcttgctctcttctaat 247  Q
    |||||| || |||||||||||||||||||||||||||    
T  9191663 cttatcctctttcctattcatcttgctctcttctaat 9191699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 29294344 - 29294532
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||| | ||| ||||||||||||| | || |||||  |||  || ||||||||||||||||||| |  |||||||| |||||||| | ||  | |||    
T  29294344 taacttcgtcctaatttaaagttattatctcaccttataattaaatttgacttcagcaactttcctcactgagacttcactataatttga-ggtttcatt 29294442  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaattga 250  Q
    ||||||| ||||||||||||  |||| |||||  | |||||||||||||||||||  |  ||||||| ||| || |||||||||||||||    
T  29294443 ctctcgataccggtcgttattattatcgtcaatcattataactattacctcttatactatttcctatgcattttactctcttctaattga 29294532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 1541 - 1692
Alignment:
Q  95 ttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaat 194  Q
    ||||| ||| ||||||||||| ||||||||||| |||||||| ||||||||||  ||||  | | |||||||| ||  ||||||||  |||| |||||      
T  1541 ttatcattaatttcgacttcaacaactttcctcaccaagactacattataattc-aaggtttcaatctctcgatactagtcgttattattatcgtcaacc 1639  T
Q  195 actataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    | |||||||||||||||||||  || |||||||||||||| |||| |||||||    
T  1640 attataactattacctcttattctctttcctattcatcttactcttttctaat 1692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 215
Target Start/End: Complemental strand, 18987049 - 18986912
Alignment:
Q  77 taaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcg 176  Q
    ||||||||||| | || ||  || ||||||||||||||   ||||| |||| ||||||||||||||| | || ||||  |||||||||||| |||||||     
T  18987049 taaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattatta-ttcaaggttttattctctcgataccggtca 18986951  T
Q  177 ttatatttattgtcaaatactataactattacctcttat 215  Q
    ||||  |||| |||||| | |||||||||||||||||||    
T  18986950 ttattattatcgtcaaagattataactattacctcttat 18986912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 23656093 - 23655908
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||||||||| |||||||| |||| | || |||||  ||| | ||||||||| |||||||| || | |||||| |||||||| || || |  | |||    
T  23656093 taacttcattctaatttaaagtaattatctcaccttattattaatctcgacttcaacaactttcttcactaagactacattataa-ttcaatgtttcatt 23655995  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||||||| ||  ||| ||||  |||| |||||  | ||||||| ||||| |||||| |  |||||||||||||| | ||||||||||    
T  23655994 ctctcgatactagtcattattattatcgtcaaccattataactgttaccacttatcctttttcctattcatctttccctcttctaat 23655908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 44586008 - 44585955
Alignment:
Q  197 tataactattacctcttatcttcattcctattcatcttgctctcttctaattga 250  Q
    |||||||||||||||||||| |  |||||||||||||| | |||||||||||||    
T  44586008 tataactattacctcttatcctatttcctattcatctttccctcttctaattga 44585955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 24786637 - 24786722
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataat 146  Q
    ||||||| ||||| |||| |||||||| | || |||||| ||| ||||||||||| ||| ||||||| | ||||||  ||||||||    
T  24786637 taacttcgttctaatttatagttattatctcaccttatcattaatttcgacttcaacaagtttcctcactaagactatattataat 24786722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 4337 - 4185
Alignment:
Q  66 tcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctc 165  Q
    |||||||| ||||||||||||| | ||  | ||| |||||||||||||||  ||||| |||| ||||||||||||||||| || ||||  | ||||||||    
T  4337 tcattctaatttaaagttattatcgcacttgatcattactttcgacttcataaacttccctcaccaagacttcattataa-ttcaaggtttcattctctc 4239  T
Q  166 gacaccggtcgttatatttattgtcaaatactataactattacctcttatcttc 219  Q
    || ||  ||| ||||  |||| |||||| | |||||||| |||||||| |||||    
T  4238 gatactagtcattattattatcgtcaaacattataactactacctcttctcttc 4185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 52578 - 52696
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| |||||| ||| ||||||| | | ||| ||||| ||||  || |||||||||||||||||| | |||||| |||||||| |||||||  |||||    
T  52578 taacttgattctaattttaagttatcatctcatattatcattaccctcaacttcagcaactttcctcactaagactccattataa-tttaaggttttatt 52676  T
Q  161 ctctcgacaccggtcgttat 180  Q
    ||||||| |||||| |||||    
T  52677 ctctcgataccggttgttat 52696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 87244 - 87134
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    |||||| |||||| ||||||||||| | | ||| ||||| ||||  || || | ||||||||||||| | |||||| |||||||| |||||||  |||||    
T  87244 taacttgattctaatttaaagttatcatctcatattatcattaccctcaacgttagcaactttcctctctaagactccattataa-tttaaggttttatt 87146  T
Q  161 ctctcgacaccg 172  Q
    ||||||| ||||    
T  87145 ctctcgataccg 87134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 3303 - 3119
Alignment:
Q  61 taacttcattctattttaaagttattaccccatcttatcgttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttatt 160  Q
    ||||||| ||||| ||||||||||||| | || |||||| |||  || ||||||| |||||||||||    |||||||| ||||| || ||||  | |||    
T  3303 taacttcgttctaatttaaagttattatctcaccttatcattaaattagacttcaacaactttcctcattgagacttcactataa-ttcaaggtttcatt 3205  T
Q  161 ctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    |||| || ||| ||| ||||  |||| |||||  | |||||||||||||| |||||||  ||||| | |||||||||||||||||||    
T  3204 ctcttgataccagtcattattattatcgtcaaccattataactattacct-ttatcttatttcctctgcatcttgctctcttctaat 3119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 13763 - 13660
Alignment:
Q  130 caagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaatactataactattacctcttatcttcattcctattc 229  Q
    ||||||||||||||||||  ||||  |||||||||||| ||||||| ||||  |||| | |||| | ||||||||||||||||||| | | || ||||||    
T  13763 caagacttcattataattc-aaggttttattctctcgataccggtcattattattatcgccaaagattataactattacctcttatttgcttttctattc 13665  T
Q  230 atctt 234  Q
    |||||    
T  13664 atctt 13660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 51626526 - 51626479
Alignment:
Q  200 aactattacctcttatcttcattcctattcatcttgctctcttctaat 247  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||||||    
T  51626526 aactattacctcttatcctctttcctatgcatcttgctcccttctaat 51626479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 10616 - 10763
Alignment:
Q  101 ttactttcgacttcagcaactttcctcgccaagacttcattataattttaaggagttattctctcgacaccggtcgttatatttattgtcaaatactata 200  Q
    |||||||  ||||||| |||||||||| | ||  |||||||||||||  |||   |||||||||| | | | || |||||  |||| |||||| | ||||    
T  10616 ttacttttaacttcagaaactttcctcactaatgcttcattataattc-aagattttattctctcaatatctgttgttattattatcgtcaaacattata 10714  T
Q  201 actattacctcttatcttcattcctattcatcttgctctcttctaattg 249  Q
    ||||||||| ||||||  | ||||||  ||||||||| |||||||||||    
T  10715 actattaccgcttatccgctttcctaaacatcttgctttcttctaattg 10763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University