View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_245 (Length: 250)
Name: NF9913A_low_245
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_245 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 31633564 - 31633344
Alignment:
| Q |
35 |
gcctttggttggcgcccacaaatgcaatcaatatcaacattatagtgaagt-----caatgacatatgtgctatactacaatgaaagtctaataaagtac |
129 |
Q |
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| T |
31633564 |
gcctttggttggcgtccacaaatgcaatcaatatcaacattatagtgaagtgaagtcaatgacatatgtgctatactacaatgaaagtctaataaagtac |
31633465 |
T |
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| Q |
130 |
taataatgctttgcatatataaccaatctgtcaagtttgaagtgtgaacataagaaagactaaactcttgtaattgttcacaatttagctaattcagctc |
229 |
Q |
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| T |
31633464 |
ttataatgctttgcatatataaccaatctgtcaagtttgaagtgtgaacataagaaagaataaactcttgtaattgttcacaatttagctaattcagctc |
31633365 |
T |
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| Q |
230 |
aattattcagatattggagca |
250 |
Q |
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||||||||||||||||||||| |
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| T |
31633364 |
aattattcagatattggagca |
31633344 |
T |
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