View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_247 (Length: 249)
Name: NF9913A_low_247
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_247 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 21705988 - 21706218
Alignment:
| Q |
18 |
acatcattcttctcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaaactccatttccttcacaattttattgggatatgtcccgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
21705988 |
acatcattcttctcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaatctcgaattccttcacaattt-attgggatatgtcccgaa |
21706086 |
T |
|
| Q |
118 |
tactgtcatgcaaagtgcccatctcactctttaaaggatcttcttgtgagcgattgtcctaaattggctttgtcatggatcgctgtgatgatacgctctg |
217 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21706087 |
tactgtcttgcaaagtggccatctcactctttaaaggctcttgttgtgaacgattgtcccaaattggctttgtcatggatctttgtgatgatacgctctg |
21706186 |
T |
|
| Q |
218 |
atcatagtcaaaatgaagtatgttctattttg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21706187 |
atcatagtcaaaatgaagtatgttctattttg |
21706218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 21713543 - 21713334
Alignment:
| Q |
18 |
acatcattcttctcacaaataccacaaccacatcatgcttcctcaactgaaagtactcaaactccatttccttcacaattttattgggatatgtcccgaa |
117 |
Q |
| |
|
||||||||| |||||| |||||| ||||||| ||||||| |||||||| |||| ||||||||| || ||| ||||| | |||||||| ||||| ||| |
|
|
| T |
21713543 |
acatcattcatctcaccaatacctgaaccacaccatgctttctcaactggaagttctcaaactcagttctcttgacaatctcattgggatgtgtcctgaa |
21713444 |
T |
|
| Q |
118 |
tactgtcatgcaaagtgcccatctcactctttaaaggatcttcttgtgagcgattgtcctaaattggctttgtcatggatcgctgtgatgatacgctctg |
217 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | ||||||| ||||| |||||||| ||||||| | |||| ||||||||| | ||||| || |||| |
|
|
| T |
21713443 |
tactgtcatgcgaagtggccatctcactctttgagggatcttgttgtggaggattgtcccaaattggatatgtcgtggatcgctcttatgattcgttctg |
21713344 |
T |
|
| Q |
218 |
atcatagtca |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
21713343 |
gtcatagtca |
21713334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 21709088 - 21709144
Alignment:
| Q |
172 |
tgtcctaaattggctttgtcatggatcgctgtgatgatacgctctgatcatagtcaa |
228 |
Q |
| |
|
||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21709088 |
tgtccaaagttggctatgttatggatcgctgtgatgatacgctctgatcatagtcaa |
21709144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University