View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_248 (Length: 249)
Name: NF9913A_low_248
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_248 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 38512178 - 38512414
Alignment:
| Q |
13 |
atggacatcaagtagtgtgcatatggacataaagtagtgcgcaatggtgaaagtggcagcttcataagtgtttatacctaatttcgtgaagagttcaata |
112 |
Q |
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| T |
38512178 |
atggacataaagtagtgtgcatatggacataaagtagtgcgcaatggtgaaagtggcagcttcataagtgtttatacctaatttcatgaagagttcaatg |
38512277 |
T |
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| Q |
113 |
gataaaatagttttacgctgtcatccagatatatctctgcaaatgtttgtgaagatattttaggatttaaaatagcggtgtggctcaatgaagagatatg |
212 |
Q |
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| T |
38512278 |
gataaaatagttttacactgtcatccagatatatctctgcaaatgtttgtgaagatattttaggatttaaaatagcggtgtggctcaatgaagagatatg |
38512377 |
T |
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| Q |
213 |
atttgacgacaatgtaaaactatttcacactttcaaa |
249 |
Q |
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| T |
38512378 |
atttgacgacaatgtaaaactatttcacactttcaaa |
38512414 |
T |
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