View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_25 (Length: 441)
Name: NF9913A_low_25
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Complemental strand, 3592424 - 3591992
Alignment:
| Q |
13 |
agatggacatcatgacattagtatccataaacttttggataactgttgcttagattgtttg----atcttcttgatcttgaacaatgcagattgacagtg |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3592424 |
agatggccatcatgacattagtatccataaacttttggataactgttgcttagattgtttggtcgatcttcttgatcttgaacaatgcagattgacagtg |
3592325 |
T |
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| Q |
109 |
ttcatgaagatggtgcagtggtttttaaagatggaaatgcagttattgctgacttcattgtacattgcacagggtattcttagcattccctattagtttt |
208 |
Q |
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| T |
3592324 |
ttcatgaagatggtgcagtggtttttaaagatggaaatgcagttatcgctgacttcattgtacattgcacagggtattcttagcattccctattagtttt |
3592225 |
T |
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| Q |
209 |
tcttttaaaccagtttatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgcatttatcgacaatgtcaaaa |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592224 |
tcttttaaaccagttcatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgcatttatcgacaatgtcaaaa |
3592125 |
T |
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| Q |
309 |
ttgcaaagttatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacctgcaattgagacataaagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592124 |
ttgcaaagttatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacctgcaattgagacataaagt |
3592025 |
T |
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| Q |
409 |
cttgcatattaactaaaagaaaaaagtgaacca |
441 |
Q |
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| T |
3592024 |
cttgcatattaactacaagaaaaaagtgaacca |
3591992 |
T |
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