View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_252 (Length: 249)
Name: NF9913A_low_252
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_252 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 31915504 - 31915751
Alignment:
| Q |
1 |
ggtgtttggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtatcagagtagatggaaatgatgcactagctgtttatagtacag |
100 |
Q |
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| T |
31915504 |
ggtgtttggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtatcagagtagatggaaatgatgcacttgctgtttatagtgcag |
31915603 |
T |
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| Q |
101 |
ttcacaccgcacgtgaaattgctataaaagaacaaagaccagtcttaattgaggtatgattgagttgagctcctaattttacgtcatgtcaagattatca |
200 |
Q |
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| T |
31915604 |
ttcataccgcacgtgaaattgctataaaagaacaaagaccagtcttaattgaggtatgattgagttgagctcctaattttacgtcatgccaagattatca |
31915703 |
T |
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| Q |
201 |
tgattctaagtattttcactaactggtctactggtgaatgaatgatgt |
248 |
Q |
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| T |
31915704 |
tgattctaagtattttcaccaactggtctactggtgaatgaatgatgt |
31915751 |
T |
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Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 40664116 - 40664351
Alignment:
| Q |
6 |
ttggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtatcagagtagatggaaatgatgcactagctgtttatagtacagttcac |
105 |
Q |
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| T |
40664116 |
ttggttaggtgatggtattgtggtgaaaggtcaagcttatggaatatggagtattcgagtagatggaaatgatgcacttgctgtttatagtgcagttcat |
40664215 |
T |
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| Q |
106 |
accgcacgtgaaattgctataaaagaacaaagaccagtcttaattgaggtatgattgagttgagctcctaattttacgtcatgtcaagattatcatgatt |
205 |
Q |
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| T |
40664216 |
actgcacgtgaaattgctataaaagaacaaagaccagtcttaatcgaggtatgattaacttgagctcctaatttcacgtcaagctaagattatcatgatt |
40664315 |
T |
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| Q |
206 |
ctaagtattttcactaactggtctactggtgaatga |
241 |
Q |
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| T |
40664316 |
ctaaatattttcactaactgatctcatggtgaatga |
40664351 |
T |
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