View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_253 (Length: 249)
Name: NF9913A_low_253
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_253 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 6916199 - 6916418
Alignment:
| Q |
22 |
cagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgatgattccagtgaacttgcctttaagttggcttctatctatgcttttagaga |
121 |
Q |
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| T |
6916199 |
cagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgcttttagaga |
6916298 |
T |
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| Q |
122 |
gtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacggaatttcagggagctgttgctggtgacctcaac |
221 |
Q |
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| T |
6916299 |
gtgttacacagcttccagaccagttatattagaacctgttatgc----tgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaac |
6916394 |
T |
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| Q |
222 |
aagagaaaaggtgtgattgttggc |
245 |
Q |
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| T |
6916395 |
aagagaaaaggtgtgattgttggc |
6916418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 15038150 - 15038055
Alignment:
| Q |
24 |
gttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgatgattccagtgaacttgcctttaagttggcttctatctatgcttttaga |
119 |
Q |
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| T |
15038150 |
gttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctatctatgcttttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
121 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacggaatttcagggagctgttgctggtgacctcaa |
220 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
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| Q |
221 |
caag |
224 |
Q |
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|||| |
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| T |
15037828 |
caag |
15037825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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