View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_254 (Length: 248)
Name: NF9913A_low_254
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_254 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 16911456 - 16911625
Alignment:
| Q |
35 |
gttgagcggttacgagggaatgaatattccaaactggatgacagatatttctagtttggcatgtttggttgatgttaaactcatgaagtgcataaactgt |
134 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16911456 |
gttgagcggttaccggggaatgaatattccaaactggatgacagatatttctattttgggacgtttggttgatgttaaactcatgaattgcataaactgt |
16911555 |
T |
|
| Q |
135 |
cgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtga |
204 |
Q |
| |
|
| |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16911556 |
agccaacttcctccacttggtaaattaccttttttaaacactctttatctatctcaaatgacaaatgtga |
16911625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 16916651 - 16916820
Alignment:
| Q |
35 |
gttgagcggttacgagggaatgaatattccaaactggatgacagatatttctagtttggcatgtttggttgatgttaaactcatgaagtgcataaactgt |
134 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16916651 |
gttgagccgttacggcggaatgaatattccaaactggatgacagatatttctattttgggacgtttggttgatgttaaactcatgaattgcataaactgt |
16916750 |
T |
|
| Q |
135 |
cgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatgacaaatgtga |
204 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16916751 |
agtcaacttcctccacttggtaaattacctttgttaaccactctttatttatctcaaatgacaaatgtga |
16916820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 16974869 - 16974935
Alignment:
| Q |
120 |
aagtgcataaactgtcgtcaacttcctccacttggtaaattaaattgtttaaccactctttatctatctcaaatga |
195 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16974869 |
aagtgcagaaactgtcgtcaacttcctcgacttggta---------gtttaaccactctttatctatctcaaatga |
16974935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 16837465 - 16837327
Alignment:
| Q |
50 |
gggaatgaatattccaaactggatgacagatatttctagtttggcatgtttggttgatgttaaactcatgaagtgcataaactgtcgtcaacttcctcca |
149 |
Q |
| |
|
|||||| ||||||||||| ||||||| | ||| ||||| ||||| | | || ||| |||||| |||| || || | |||||||| | ||||| ||| |
|
|
| T |
16837465 |
gggaataaatattccaaattggatgaaaaatacttctattttggaagggttagtttatgttatactctataactgtaaaaactgtcagcggcttccccca |
16837366 |
T |
|
| Q |
150 |
cttggtaaattaaattgtttaaccactctttatctatct |
188 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
16837365 |
cttggtaaattaccttgtttaaccactctttatgtatct |
16837327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 18807686 - 18807727
Alignment:
| Q |
141 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
182 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18807686 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
18807727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 18874683 - 18874724
Alignment:
| Q |
141 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
182 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18874683 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
18874724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 16842485 - 16842444
Alignment:
| Q |
141 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
182 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16842485 |
cttcccccacttggtaaattaccttgtttaaccactctttat |
16842444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 3280 - 3328
Alignment:
| Q |
140 |
acttcctccacttggtaaattaaattgtttaaccactctttatctatct |
188 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
3280 |
acttcctccacttggtaaattaccttgtttaaccactctttatgtatct |
3328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 8021 - 7980
Alignment:
| Q |
141 |
cttcctccacttggtaaattaaattgtttaaccactctttat |
182 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8021 |
cttcctccacttggtaaattaccttgtttaaccactctttat |
7980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University