View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_256 (Length: 248)
Name: NF9913A_low_256
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_256 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 108 - 248
Target Start/End: Complemental strand, 38512620 - 38512480
Alignment:
| Q |
108 |
actacaaacggcaagtcaagattacaacaaatggaagaactgctactatataaagcgctagcttggaccaaattctagtttatgggagtttctcagttag |
207 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38512620 |
actagaaacggcaagtcaagactacaacaaatggaagaactgctactatataaagcgctagcttggaccaaattctagtttatgggagtttctcagttag |
38512521 |
T |
|
| Q |
208 |
aataagtttatgtttcttcacttgcaaaaaagtccttaaaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38512520 |
aataagtttatgtttcttcacttgcaaaaaagtccttaaaa |
38512480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 38512746 - 38512636
Alignment:
| Q |
15 |
atggacatcaaaacaagaaatgtggagagggtttcttctagtttttgtgatgaagtaaacaaaggc-ttgattgggttgcatgcaaaagccaagactaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38512746 |
atggacatcaaaacaagaaatgtggagagggtttcttctagtttttgtgatgaagtaaacaaaggctttgattgggttgcatgcaaaagccaagactaca |
38512647 |
T |
|
| Q |
114 |
aacggcaagtc |
124 |
Q |
| |
|
||||||||||| |
|
|
| T |
38512646 |
aacggcaagtc |
38512636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 1743554 - 1743503
Alignment:
| Q |
187 |
ttatgggagtttctcagttagaataagtttatgtttcttcacttgcaaaaaa |
238 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1743554 |
ttatgggagcttctcatttagaataagtttatggttcttcacttacaaaaaa |
1743503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University