View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_259 (Length: 248)

Name: NF9913A_low_259
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_259
NF9913A_low_259
[»] chr3 (7 HSPs)
chr3 (10-232)||(41707294-41707527)
chr3 (145-232)||(52123955-52124044)
chr3 (162-217)||(2419481-2419537)
chr3 (10-47)||(8363960-8363997)
chr3 (10-47)||(23067964-23068001)
chr3 (145-232)||(41451894-41451983)
chr3 (19-48)||(46791945-46791974)
[»] chr7 (8 HSPs)
chr7 (141-232)||(27888374-27888467)
chr7 (162-232)||(39254175-39254246)
chr7 (10-48)||(4099740-4099778)
chr7 (10-48)||(11672388-11672426)
chr7 (145-232)||(6442257-6442346)
chr7 (145-232)||(7459435-7459524)
chr7 (195-232)||(36845573-36845610)
chr7 (146-232)||(6580002-6580090)
[»] chr4 (11 HSPs)
chr4 (140-232)||(8109048-8109142)
chr4 (10-47)||(19661169-19661206)
chr4 (145-232)||(24938414-24938503)
chr4 (162-232)||(722249-722320)
chr4 (162-232)||(754597-754668)
chr4 (139-232)||(24834670-24834765)
chr4 (10-49)||(53011502-53011541)
chr4 (10-47)||(32131028-32131065)
chr4 (145-232)||(43771218-43771307)
chr4 (10-47)||(44477827-44477864)
chr4 (195-232)||(49077341-49077378)
[»] chr8 (3 HSPs)
chr8 (162-232)||(24055942-24056013)
chr8 (145-232)||(35151728-35151817)
chr8 (4-48)||(1003901-1003945)
[»] chr5 (4 HSPs)
chr5 (10-48)||(13423648-13423686)
chr5 (141-184)||(34368357-34368401)
chr5 (162-232)||(28490739-28490810)
chr5 (195-232)||(14553604-14553641)
[»] chr1 (6 HSPs)
chr1 (163-232)||(33193142-33193212)
chr1 (10-47)||(20470516-20470553)
chr1 (146-230)||(51732371-51732456)
chr1 (10-47)||(18128178-18128215)
chr1 (141-232)||(30678906-30678999)
chr1 (10-46)||(14084939-14084975)
[»] chr6 (4 HSPs)
chr6 (10-47)||(31258697-31258734)
chr6 (10-47)||(12622199-12622236)
chr6 (11-47)||(3515091-3515127)
chr6 (146-232)||(34905428-34905516)
[»] chr2 (5 HSPs)
chr2 (141-184)||(41805915-41805959)
chr2 (162-232)||(38464255-38464326)
chr2 (145-232)||(6980119-6980208)
chr2 (10-47)||(13020210-13020247)
chr2 (195-231)||(14489590-14489626)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 41707294 - 41707527
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctgagtgtgtgtgc---------tgtgaaattgggtttctgtt--attggatttttgtgtttagt 98  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||         ||||||||||||||||||||  ||||| ||||||||||||||    
T  41707294 ctggttgaacaccttgcacaccctcaaggctgggcctgggtgtgtgtgcgctgtgcgctgtgaaattgggtttctgttttattggctttttgtgtttagt 41707393  T
Q  99 ttccttaatacgagaaggtccttacacctaatctatgggcatgaggaatgctagcaacacttattttgaacactttctttaacacttattttcttatggt 198  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41707394 ttccttaatacgagaaggtccttacacctaatttttgggcatgaggaatgctagcaacacttattttgaacactctctttaacacttattttcttatggt 41707493  T
Q  199 ttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||||||||||||||||||||||    
T  41707494 ttaaattattgtgggtctatactttaaaaattga 41707527  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 52123955 - 52124044
Alignment:
Q  145 aatgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||| | ||||||||||| ||| ||| ||| | |||||||| ||||||||| |||||||||||| ||||| ||||||||    
T  52123955 aatgctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaattga 52124044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 2419481 - 2419537
Alignment:
Q  162 ttttgaacactttctttaacacttattttctta-tggtttaaattattgtgggtcta 217  Q
    ||||||||||||||||||| ||| | ||||||| |||||||||| ||||||||||||    
T  2419481 ttttgaacactttctttaatactcactttcttattggtttaaatcattgtgggtcta 2419537  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 8363997 - 8363960
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  8363997 ctggttgagcaccttgcacaccctcaaggccgggcctg 8363960  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 23067964 - 23068001
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  23067964 ctggttgagcaccttgcacaccctcaaggccgggcctg 23068001  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 41451894 - 41451983
Alignment:
Q  145 aatgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||| | ||||||||||| ||| ||| ||| | | |||||| ||||||||| ||||||||||||  |||| ||||||||    
T  41451894 aatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctactctttgaaaattga 41451983  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 46791945 - 46791974
Alignment:
Q  19 caccttgcacaccctcaaggcggggcctga 48  Q
    ||||||||||||||||||||||||||||||    
T  46791945 caccttgcacaccctcaaggcggggcctga 46791974  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 27888467 - 27888374
Alignment:
Q  141 gaggaatgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||||||| | |||||| |||| ||| ||||||| | | |||||| ||||||||| |||||||||||| ||||||||||||||    
T  27888467 gaggaatgctagcaacactctcttttgagcactctctctaacactcactctcttattggtttaaatcattgtgggtctacactttaaaaattga 27888374  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 39254246 - 39254175
Alignment:
Q  162 ttttgaacactttctttaacacttattttcttatgg-tttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||| ||||||||||| | | |||||| | |||||||||||||||||||| | ||||||||||||    
T  39254246 ttttgaacactctctttaacactcactctcttattgatttaaattattgtgggtctacattttaaaaattga 39254175  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 4099778 - 4099740
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctga 48  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  4099778 ctggttgagcaccttgcacaccctcaaggccgggcctga 4099740  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 11672426 - 11672388
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctga 48  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  11672426 ctggttgagcaccttgcacaccctcaaggccgggcctga 11672388  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 6442346 - 6442257
Alignment:
Q  145 aatgctagcaacactta-ttttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||| |||||||||||  ||||||||||| ||||||| ||| | | | |||| ||||||||| |||||||||||| ||||| ||||||||    
T  6442346 aatgttagcaacactttcttttgaacactatctttaatactcactcttttattggtttaaatcattgtgggtctacactttgaaaattga 6442257  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 7459524 - 7459435
Alignment:
Q  145 aatgctagcaacacttat-tttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||||||||||||| | |||||| ||| ||||||| ||| | | | |||| ||||||||||||||||| |||||| ||| ||||||||    
T  7459524 aatgctagcaacacttttatttgaatactctctttaatactcactcttttattggtttaaattattgtggatctatattttgaaaattga 7459435  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 36845573 - 36845610
Alignment:
Q  195 tggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  36845573 tggtttaaatcattgtgggtctatactttgaaaattga 36845610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 6580002 - 6580090
Alignment:
Q  146 atgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||| ||||||| | ||||||||||| ||| ||| ||| | | |||||| |||||||||||||||||||| ||| ||| ||||||||    
T  6580002 atgctaccaacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtccatattttgaaaattga 6580090  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 8109142 - 8109048
Alignment:
Q  140 tgaggaatgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||| ||||||||||||||| | ||||||||||| ||| ||| ||| | |||||||| ||||||||| |||||||||||| ||||| ||||||||    
T  8109142 tgagtaatgctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaattga 8109048  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 19661206 - 19661169
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| |||||||||||||||||||||||||||||    
T  19661206 ctggttgagcaccttgcacaccctcaaggcggggcctg 19661169  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 24938414 - 24938503
Alignment:
Q  145 aatgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||| | | |||| |||||||||| ||| ||||| | |||||| ||||||||| ||||| |||||| ||||||||||||||    
T  24938414 aatgctagcaacattatcttttcaacactttctctaatacttactctcttattggtttaaatcattgtaggtctacactttaaaaattga 24938503  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 722320 - 722249
Alignment:
Q  162 ttttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||| ||| ||| ||| | | |||||| ||||||||| |||||||||||| ||||||||||||||    
T  722320 ttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaattga 722249  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 754597 - 754668
Alignment:
Q  162 ttttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||| ||| ||| ||| | | |||||| ||||||||| |||||||||||| ||||||||||||||    
T  754597 ttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttaaaaattga 754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 24834765 - 24834670
Alignment:
Q  139 atgaggaatgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||||||||| | |||| ||| || ||| ||| | | | | |||||| |||||||||||||||||||||| ||||| ||||||||    
T  24834765 atgaggaatgctagcaacactctcttttaaactctctctctaatagtcactctcttattggtttaaattattgtgggtctacactttgaaaattga 24834670  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 53011541 - 53011502
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctgag 49  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  53011541 ctggttgagcaccttgcacaccctcaaggctgggcctgag 53011502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 32131028 - 32131065
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32131028 ctggttgaacaccttacacaccctcaaggccgggcctg 32131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 43771307 - 43771218
Alignment:
Q  145 aatgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||||||||| || | ||||||||||  ||||||| ||| | | |||||| ||||||||| |||||||||||| ||||| ||||||||    
T  43771307 aatgctagcaacgctctcttttgaacaccctctttaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattga 43771218  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 44477864 - 44477827
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  44477864 ctggttgaacaccttacacaccctcaaggccgggcctg 44477827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 49077378 - 49077341
Alignment:
Q  195 tggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  49077378 tggtttaaatcattgtgggtctacactttaaaaattga 49077341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 24055942 - 24056013
Alignment:
Q  162 ttttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||| ||||||| | | |||||| ||||||||| |||||||||||| ||||| ||||||||    
T  24055942 ttttgaacactttctctaacactcactctcttattggtttaaataattgtgggtctacactttgaaaattga 24056013  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 35151728 - 35151817
Alignment:
Q  145 aatgctagcaacact-tattttgaacactttctttaacacttattttcttatg-gtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||| | ||||||||||| | ||||| | | | ||||||||  |||| |||||||||||||||| ||||||||||||||    
T  35151728 aatgctagcaacactctcttttgaacactctatttaatattcactttcttattagtttgaattattgtgggtctacactttaaaaattga 35151817  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 1003945 - 1003901
Alignment:
Q  4 cgcgggctggttgaacaccttgcacaccctcaaggcggggcctga 48  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  1003945 cgcggcctggttgagcactttgcacaccctcaaggccgggcctga 1003901  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 13423686 - 13423648
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctga 48  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  13423686 ctggttgagcaccttgcacaccctcaaggcggggcctga 13423648  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 34368357 - 34368401
Alignment:
Q  141 gaggaatgctagcaacactta-ttttgaacactttctttaacact 184  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  34368357 gaggaatgctagcaacacttatttttgaacactttctctaacact 34368401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 28490739 - 28490810
Alignment:
Q  162 ttttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||| ||| ||| ||| | | |||||| |||||||||||||||||||||| ||||| ||||||||    
T  28490739 ttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtctacactttcaaaattga 28490810  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 14553641 - 14553604
Alignment:
Q  195 tggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  14553641 tggtttaatttattgtgggtctacactttaaaaattga 14553604  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 33193212 - 33193142
Alignment:
Q  163 tttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||||||||||| ||| ||| ||| |||||| ||||||||| |||||||||||| ||||| ||||||||    
T  33193212 tttgaacactttctctaatactcattctcttattggtttaaatcattgtgggtctacactttgaaaattga 33193142  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 20470553 - 20470516
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| |||||||||||||||||||||||||||||    
T  20470553 ctggttgagcaccttgcacaccctcaaggcggggcctg 20470516  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 51732456 - 51732371
Alignment:
Q  146 atgctagcaacacttattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaatt 230  Q
    ||||||||||||||| ||||||||  ||||| ||| ||| | | | |||| ||||||||||||||||||| |||||||| ||||||    
T  51732456 atgctagcaacactttttttgaacgttttctctaatactcactcttttattggtttaaattattgtgggtttatactttgaaaatt 51732371  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 18128178 - 18128215
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  18128178 ctggttgagcaccttgcacaccctcaaggccgggcctg 18128215  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 30678906 - 30678999
Alignment:
Q  141 gaggaatgctagcaacact-tattttgaacactttctttaacacttattttctta-tggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||||||||||| | |||||| |||| ||| ||||||| | | ||||| ||| |||||| |||||| ||||| ||||| ||||||||    
T  30678906 gaggaatgctagcaacactcttttttgagcactctctctaacactcactctcttattggcttaaatcattgtgagtctacactttgaaaattga 30678999  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 14084939 - 14084975
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcct 46  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  14084939 ctggttgagcaccttgcacaccctcaaggcagggcct 14084975  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 31258697 - 31258734
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| |||||||||||||||||||||||||||||    
T  31258697 ctggttgagcaccttgcacaccctcaaggcggggcctg 31258734  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 12622199 - 12622236
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  12622199 ctggttgagcaccttgcacaccctcaaggctgggcctg 12622236  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 3515091 - 3515127
Alignment:
Q  11 tggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3515091 tggttgagcaccttgcacaccctcaaggccgggcctg 3515127  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 34905516 - 34905428
Alignment:
Q  146 atgctagcaacact-tattttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||||||||||| | ||||||||||  ||| ||| ||| | | |||||| ||||||||| |||||||||||| ||||| ||||||||    
T  34905516 atgctagcaacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattga 34905428  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 41805959 - 41805915
Alignment:
Q  141 gaggaatgctagcaacact-tattttgaacactttctttaacact 184  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  41805959 gaggaatgctagcaacactctattttggacactttctttaacact 41805915  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 38464326 - 38464255
Alignment:
Q  162 ttttgaacactttctttaacacttattttcttat-ggtttaaattattgtgggtctatactttaaaaattga 232  Q
    ||||||||||| ||| ||| ||||| | |||||| ||||||||| |||||||||||| ||||| ||||||||    
T  38464326 ttttgaacactctctctaatacttactctcttattggtttaaatcattgtgggtctacactttgaaaattga 38464255  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 6980119 - 6980208
Alignment:
Q  145 aatgctagcaacact-tattttgaacactttctttaacacttattttcttatg-gtttaaattattgtgggtctatactttaaaaattga 232  Q
    |||||| |||||||| | ||||||||||||||| ||| ||| | | ||||||  ||| |||| |||||||||||||||||| ||||||||    
T  6980119 aatgcttgcaacactctcttttgaacactttctctaatactcactctcttattagttgaaatcattgtgggtctatactttgaaaattga 6980208  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 13020247 - 13020210
Alignment:
Q  10 ctggttgaacaccttgcacaccctcaaggcggggcctg 47  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  13020247 ctggttgagcaccttgcacaccctcaaggccgggcctg 13020210  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 14489590 - 14489626
Alignment:
Q  195 tggtttaaattattgtgggtctatactttaaaaattg 231  Q
    |||||||||||||||||| |||| |||||||||||||    
T  14489590 tggtttaaattattgtggatctacactttaaaaattg 14489626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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