View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_261 (Length: 247)
Name: NF9913A_low_261
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_261 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28182982 - 28183213
Alignment:
| Q |
1 |
gtgtatgagactagtctactgtaagatgtgaagggaactcattatgtacataatttctttgttataaattaagcttatctaaaataaatagtagttcatt |
100 |
Q |
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| T |
28182982 |
gtgtatgagactagtctgctgtaagaagtgaagggaactcattatgtacataatttctttgttataaattaagcttatctaaaataaatagtagttcatt |
28183081 |
T |
|
| Q |
101 |
ttgtaggataaaatagcatatctaatggtttatatgacatgtgtacatacaaacctatggttatgttgaaatatgaaatatcaactttcaattcagattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28183082 |
ttgtaggataaaatagcatatctaatggtttatatgacatgtgtacatacaaatctatggttatgttgaaatatgaaatatcaactttcaattcagattt |
28183181 |
T |
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| Q |
201 |
gttcatttactcatcattacgtacatgatgtc |
232 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
28183182 |
gttcatttactcatcattacgtacataatgtc |
28183213 |
T |
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