View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_262 (Length: 247)
Name: NF9913A_low_262
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_262 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 50113284 - 50113065
Alignment:
| Q |
11 |
atggacatcagaataattttaatttattaataatcaagtcattgcacaagaggaacagagactcacaagttagaaacaagtaaaagatgtcgtatataag |
110 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50113284 |
atggacgtaagaataattttaatttattaataatcaagtcattgcacaagaggaactgagactgacaagttagaaacaagtaaaagacgtcgtatataag |
50113185 |
T |
|
| Q |
111 |
cgaacactcaaatgaaaagacatacacctcagacatcaaatacaccaatacatacaccatccaaccgatgactaaaactaaaaccaatacaatctaacca |
210 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
50113184 |
cgaacactcaaatgaaaacacgtacacctcagacatcaaatacaccaatacatacaccatccaaccgatggctaacactaaaaccaatacaatctaacca |
50113085 |
T |
|
| Q |
211 |
tcaaaccgaagtcaactcca |
230 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
50113084 |
tcaaaccgaagtcaactcca |
50113065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University