View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_263 (Length: 247)

Name: NF9913A_low_263
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_263
NF9913A_low_263
[»] chr7 (2 HSPs)
chr7 (148-240)||(37372343-37372435)
chr7 (9-156)||(37372905-37373060)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 37372435 - 37372343
Alignment:
Q  148 attatcaaatttcattctattaagtgagtttggttacatgaaacaaatgacactataatattatgtcatatatcacatcattctcgaactcat 240  Q
    |||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37372435 attatcaaattttattctattaagtgagattggttacatgaatcaaataacactataatattatgtcatatatcacatcactctcgaactcat 37372343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 37373060 - 37372905
Alignment:
Q  9 aataatatggagtaaatgttaatcaagcatgnnnnnnnaaaaagcatttaggaatacagatttaatcaaaagttatttcc---------tctaataaact 99  Q
    ||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||         | |||||||||    
T  37373060 aataatatggagtaaatgttaatcaagcatatttttttaaaaagcatctaggaatacagatttaatcaaaagttatttccgataataaatttaataaact 37372961  T
Q  100 tnnnnnnnnntcctttatgtttagtttttctatccatgccaacaatcaattatcaaa 156  Q
    |         |||||||||||||||||||||||||||||||||||||||||||||||    
T  37372960 taaaaaaaa-tcctttatgtttagtttttctatccatgccaacaatcaattatcaaa 37372905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University