View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_265 (Length: 247)

Name: NF9913A_low_265
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_265
NF9913A_low_265
[»] chr1 (4 HSPs)
chr1 (12-238)||(18645294-18645519)
chr1 (12-143)||(42377493-42377621)
chr1 (108-145)||(14459943-14459980)
chr1 (109-145)||(30986565-30986601)
[»] chr2 (3 HSPs)
chr2 (12-240)||(16374755-16374984)
chr2 (12-242)||(30614736-30614965)
chr2 (12-147)||(18370611-18370746)
[»] chr3 (3 HSPs)
chr3 (12-242)||(8363013-8363242)
chr3 (7-136)||(17521913-17522042)
chr3 (189-244)||(17522078-17522133)
[»] chr7 (1 HSPs)
chr7 (7-147)||(11454269-11454409)
[»] chr8 (1 HSPs)
chr8 (20-147)||(22472419-22472546)
[»] chr6 (3 HSPs)
chr6 (77-145)||(22916934-22917002)
chr6 (77-147)||(22902104-22902174)
chr6 (77-145)||(22884206-22884274)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 18645519 - 18645294
Alignment:
Q  12 tgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagggttct 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||    
T  18645519 tgtttgagtaggatgctagataatttgatgatgtttattgtttcttttataatgtttagcacttcttaaagcatctagcaacccatgctcttagggtcct 18645420  T
Q  112 tcaaagtgtcttgtgtgtcaagtttcattttgtggcnnnnnnnntttgcgtggaaaaacctttaatttctaaggccttgattcgattcaaattagcttga 211  Q
    ||||||||||||||||||||||||| ||||||||||        |||| |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  18645419 tcaaagtgtcttgtgtgtcaagttttattttgtggc-aaaactttttgtgtggcaaaacctttaatttctaaggtcttgattcgattcaaattagcttga 18645321  T
Q  212 atcatgtcatttttattctctggtctt 238  Q
    |||||||||||||||||||||||||||    
T  18645320 atcatgtcatttttattctctggtctt 18645294  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 42377493 - 42377621
Alignment:
Q  12 tgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagggttct 111  Q
    ||||||| |||||||||||||||||||||||| ||||||| |  |||||||||| ||||||| || ||||||| ||||||| | ||||| ||||||||||    
T  42377493 tgtttgattaggatgctagataatttgatgatgtttattgctcattttataatg-ttagcacatg-taaagcacctagcaatctatgctcttagggttct 42377590  T
Q  112 tcaaagtgtcttgtgtgtcaagtttcattttg 143  Q
    || ||| |||| ||||||||||||| ||||||    
T  42377591 tc-aagcgtctcgtgtgtcaagttttattttg 42377621  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 14459980 - 14459943
Alignment:
Q  108 ttcttcaaagtgtcttgtgtgtcaagtttcattttgtg 145  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  14459980 ttcttcaaagtgtcttgtatgtcaagttacattttgtg 14459943  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 30986601 - 30986565
Alignment:
Q  109 tcttcaaagtgtcttgtgtgtcaagtttcattttgtg 145  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  30986601 tcttcaaagtgtcctgtgtgtcaagtatcattttgtg 30986565  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 16374984 - 16374755
Alignment:
Q  12 tgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagggttct 111  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||  | |||||||||| ||||||| | ||| ||||||||||||    
T  16374984 tgtttgattaggatgttagataatttgatgatatttattgtttcttt-ataatgtttagtgcatgttaaagcacctagcaatctatgtttttagggttct 16374886  T
Q  112 tcaaagtgtcttgtgtgtcaagtttcattttgtggcnnnnnnnntttgcgtggaaaaacctttaatttctaaggccttgattcgattcaaattagcttga 211  Q
    |||||||||||||||||| ||||||||||| |||||        |||| |||| ||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  16374885 tcaaagtgtcttgtgtgttaagtttcatttcgtggc-gaaactttttgtgtggcaaaacctttaatttctaaggctttgattcaattcaaaatagcttga 16374787  T
Q  212 atc--atg-tcatttttattctctggtcttgg 240  Q
    |||  ||| |||||||||||||||||| ||||    
T  16374786 atcgtatgatcatttttattctctggtgttgg 16374755  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 30614736 - 30614965
Alignment:
Q  12 tgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagggttct 111  Q
    ||||||| |||||||||||||||||||||||| ||||| ||| ||||||  ||||||| ||| |||||||||| |||||||  |||||| ||| ||||||    
T  30614736 tgtttgattaggatgctagataatttgatgatgtttatggttccttttacgatgtttaacacatgttaaagcacctagcaatacatgctcttacggttct 30614835  T
Q  112 tcaaagtgtcttgtgtgtcaagtttcattttgtggcnnnnnnnntttgcgtggaaaaacctttaatttctaaggccttgattcgattcaaattagcttga 211  Q
    |  |||||| |||||||||||||||||||||||  |        |||| |||  |||||||||  |||||||||||||||||||||||||  ||||||||    
T  30614836 ttgaagtgttttgtgtgtcaagtttcattttgtaac-aaaaccttttgtgtgacaaaaccttttctttctaaggccttgattcgattcaatatagcttga 30614934  T
Q  212 atcatgtcatttttattctctggtcttggcc 242  Q
    ||  | | ||| ||||| | |||||||||||    
T  30614935 attgtattattcttattatatggtcttggcc 30614965  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 18370611 - 18370746
Alignment:
Q  12 tgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagggttct 111  Q
    ||||||| |||| |||||| ||  |||||||| |||||||||   ||||| ||| ||| ||  |||||||||| ||||||| ||||| ||||||||||||    
T  18370611 tgtttgattaggttgctaggtatattgatgatgtttattgttctctttatgatgattaccatatgttaaagcacctagcaatccatgattttagggttct 18370710  T
Q  112 tcaaagtgtcttgtgtgtcaagtttcattttgtggc 147  Q
    |||||||||| ||||| ||||||||||| |||||||    
T  18370711 tcaaagtgtcgtgtgtttcaagtttcatattgtggc 18370746  T

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Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 8363013 - 8363242
Alignment:
Q  12 tgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagggttct 111  Q
    ||||||| || |||||||||||||||| |||| |||||||||||||||||||| |||| ||| |||||||||| ||||||| |||| || |||||||||     
T  8363013 tgtttgattacgatgctagataatttggtgatgtttattgtttcttttataatatttatcacatgttaaagcacctagcaatccatactcttagggttcc 8363112  T
Q  112 tcaaagtgtcttgtgtgtcaagtttcattttgtggcnnnnnnnntttgcgtggaaaaacctttaatttctaaggccttgattcgattcaaattagcttga 211  Q
    ||||||||||||||||||||||||| ||||| ||||        |||| |||| |||||||| |||||||||| ||||||||| |||||||||  |||||    
T  8363113 tcaaagtgtcttgtgtgtcaagttttattttatggc-aaaactatttgtgtggcaaaaccttcaatttctaagcccttgattcaattcaaattttcttga 8363211  T
Q  212 atcatgtcatttttattctctggtcttggcc 242  Q
     |  | | ||| |||||||||||||||||||    
T  8363212 gtagtattattcttattctctggtcttggcc 8363242  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 17521913 - 17522042
Alignment:
Q  7 tatggtgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagg 106  Q
    |||| ||||||| | || || ||||||| |||||||| | ||||||||||| |||| |||||||||| |||||||  |  |||||| ||||| | |||||    
T  17521913 tatgatgtttgattgggttgttagataaattgatgatgtctattgtttcttctatattgtttagcacatgttaaaagacttagcaatccatgatcttagg 17522012  T
Q  107 gttcttcaaagtgtcttgtgtgtcaagttt 136  Q
    |||  |||||||||||||||||||||||||    
T  17522013 gtttctcaaagtgtcttgtgtgtcaagttt 17522042  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 17522078 - 17522133
Alignment:
Q  189 tgattcgattcaaattagcttgaatcatgtcatttttattctctggtcttggcctt 244  Q
    ||||||||||||||||| || ||||  | ||||| |||||||||||||||||||||    
T  17522078 tgattcgattcaaattatctggaattgtatcattcttattctctggtcttggcctt 17522133  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 11454269 - 11454409
Alignment:
Q  7 tatggtgtttgagtaggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagg 106  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||  | ||| || | ||||||| ||||  | |||||    
T  11454269 tatgatgtttgattaggatgctagataatttgatgatgtttattgttccttttataatatttagcatattttatagtacctagcaatccatattcttagg 11454368  T
Q  107 gttcttcaaagtgtcttgtgtgtcaagtttcattttgtggc 147  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11454369 gttcttcaaagtgttttgtgtgtcaagtttcattttgtggc 11454409  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 22472546 - 22472419
Alignment:
Q  20 taggatgctagataatttgatgatatttattgtttcttttataatgtttagcacttgttaaagcatctagcaacccatgcttttagggttcttcaaagtg 119  Q
    |||| ||||||||| |||||| || ||||||||| |||||||| || ||||||  |||||||| |   ||||| ||||| | |||||||||||||||||     
T  22472546 taggctgctagatattttgattatgtttattgttccttttatagtgattagcatatgttaaagaacagagcaatccatgttcttagggttcttcaaagta 22472447  T
Q  120 tcttgtgtgtcaagtttcattttgtggc 147  Q
    ||||||||||||||||| ||||||||||    
T  22472446 tcttgtgtgtcaagttttattttgtggc 22472419  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 22916934 - 22917002
Alignment:
Q  77 ttaaagcatctagcaacccatgcttttagggttcttcaaagtgtcttgtgtgtcaagtttcattttgtg 145  Q
    |||||||||||||| | ||||| | ||| | ||||||||||||||||||||||||||||||||||||||    
T  22916934 ttaaagcatctagccatccatgatcttaagtttcttcaaagtgtcttgtgtgtcaagtttcattttgtg 22917002  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 22902104 - 22902174
Alignment:
Q  77 ttaaagcatctagcaacccatgcttttagggttcttcaaagtgtcttgtgtgtcaagtttcattttgtggc 147  Q
    |||||||| ||||| | ||||| | ||| | ||||||||||||||| || |||||||||||||||||||||    
T  22902104 ttaaagcacctagccatccatgatcttaagtttcttcaaagtgtctcgtctgtcaagtttcattttgtggc 22902174  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 22884206 - 22884274
Alignment:
Q  77 ttaaagcatctagcaacccatgcttttagggttcttcaaagtgtcttgtgtgtcaagtttcattttgtg 145  Q
    |||||||| ||||| | ||||| | ||| | ||||||||||||||| || |||||||||||||||||||    
T  22884206 ttaaagcacctagccatccatgatcttaagtttcttcaaagtgtctcgtctgtcaagtttcattttgtg 22884274  T

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