View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_266 (Length: 246)
Name: NF9913A_low_266
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_266 |
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| [»] scaffold0134 (1 HSPs) |
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| [»] scaffold0746 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 22901601 - 22901425
Alignment:
| Q |
56 |
aagcttgtcagcacaaccattaccttcacggaaaatatgagaagagagcacctgaatatcatgagagaaacagttgtgccatcgatttctccaccgaatt |
155 |
Q |
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||||||||| | |||||||| ||||| | ||| || ||||| || | |||||| || || |||| |||||||||||||| || || | ||||||||| |
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| T |
22901601 |
aagcttgtccgtgcaaccatttccttcgcagaagatgtgagaggaaaacacctgcatgccaagagaaaaacagttgtgccaacggttccgccaccgaata |
22901502 |
T |
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| Q |
156 |
ggaaccaaggaaggattggaaaaagcgaaaagagcactggtggagtcaccttcaatccaaataaacctccaatgatg |
232 |
Q |
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|||| ||| |||| |||||||||| ||||||||||| || |||||||| |||||||||| ||||||||||||||| |
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| T |
22901501 |
ggaatcaaagaagacatggaaaaagcaaaaagagcactagtagagtcaccctcaatccaaagaaacctccaatgatg |
22901425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 2221 - 2188
Alignment:
| Q |
66 |
gcacaaccattaccttcacggaaaatatgagaag |
99 |
Q |
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| T |
2221 |
gcacaaccattaccttcacggaaaatatgagaag |
2188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 25292604 - 25292736
Alignment:
| Q |
85 |
ggaaaatatgagaagagagcacctgaatatcatgagagaaacagttgtgccatcgatttctccaccgaattggaaccaaggaaggattggaaaaagcgaa |
184 |
Q |
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| T |
25292604 |
ggaaaatgtgtgaagagagaacctgaatactatgagacaagcaattgtgccaacagtttcgccaccgaataggaatcaaagagggatgagagaaagccaa |
25292703 |
T |
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| Q |
185 |
aagagcactggtggagtcaccttcaatccaaat |
217 |
Q |
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| T |
25292704 |
aagagcactcgtcaagtccccctcaatccaaat |
25292736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 25754593 - 25754725
Alignment:
| Q |
85 |
ggaaaatatgagaagagagcacctgaatatcatgagagaaacagttgtgccatcgatttctccaccgaattggaaccaaggaaggattggaaaaagcgaa |
184 |
Q |
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||||||| || |||||||| ||||||||| |||||| || || |||||||| | |||| ||||||||| |||| ||| || |||| || ||||| || |
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| T |
25754593 |
ggaaaatgtgtgaagagagaacctgaatactatgagacaagcaattgtgccaacagtttcgccaccgaataggaatcaaagagggatgagagaaagccaa |
25754692 |
T |
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| Q |
185 |
aagagcactggtggagtcaccttcaatccaaat |
217 |
Q |
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| T |
25754693 |
aagagcactcgtcaagtccccctcaatccaaat |
25754725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0746 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0746
Description:
Target: scaffold0746; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 6538 - 6670
Alignment:
| Q |
85 |
ggaaaatatgagaagagagcacctgaatatcatgagagaaacagttgtgccatcgatttctccaccgaattggaaccaaggaaggattggaaaaagcgaa |
184 |
Q |
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||||||| || |||||||| ||||| ||| ||||||| || || || ||||| | |||| ||||||||| |||| ||| || |||| || ||||| || |
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| T |
6538 |
ggaaaatgtgtgaagagagaacctgcataccatgagacaatcaattatgccaacagtttcgccaccgaataggaatcaaagagggatgagagaaagccaa |
6637 |
T |
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| Q |
185 |
aagagcactggtggagtcaccttcaatccaaat |
217 |
Q |
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||||||||| || |||| || ||||||||||| |
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| T |
6638 |
aagagcactcgtcaagtccccctcaatccaaat |
6670 |
T |
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