View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_268 (Length: 246)
Name: NF9913A_low_268
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_268 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 9855 - 10068
Alignment:
| Q |
17 |
tcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
9855 |
tcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaataaaaaaaatcgtggaataaag |
9954 |
T |
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| Q |
117 |
tgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaag |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9955 |
tgggcaaggaataacaaatttcctatacccacccacg-tctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaag |
10053 |
T |
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| Q |
217 |
tctgacgagaataat |
231 |
Q |
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||||||||||||||| |
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| T |
10054 |
tctgacgagaataat |
10068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 18180850 - 18181063
Alignment:
| Q |
17 |
tcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
18180850 |
tcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaataaaaaaaatcgtggaataaag |
18180949 |
T |
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| Q |
117 |
tgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaag |
216 |
Q |
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| T |
18180950 |
tgggcaaggaataacaaatttcctatacccacccacg-tctatacatgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaag |
18181048 |
T |
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| Q |
217 |
tctgacgagaataat |
231 |
Q |
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| T |
18181049 |
tctgacgagaataat |
18181063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 37189505 - 37189616
Alignment:
| Q |
17 |
tcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37189505 |
tcaatgtttgcaaatagatatcattattccaactttgatgtgaattctctattcctaatttatttctgttttctgtaataaaaaaaatagtggaataaag |
37189604 |
T |
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| Q |
117 |
tgggcaaggaat |
128 |
Q |
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|||||||||||| |
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| T |
37189605 |
tgggcaaggaat |
37189616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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