View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_277 (Length: 245)
Name: NF9913A_low_277
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_277 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 3586705 - 3586885
Alignment:
| Q |
20 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgttaatggatataagttatttttctt |
119 |
Q |
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| T |
3586705 |
ggacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctt |
3586803 |
T |
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| Q |
120 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
201 |
Q |
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| T |
3586804 |
aaccgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggtactattttttaccgcatcta |
3586885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 9789750 - 9789580
Alignment:
| Q |
31 |
ttcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgttaatggatataagttatttttcttaaccgttccca |
130 |
Q |
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| T |
9789750 |
ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca |
9789651 |
T |
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| Q |
131 |
catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
201 |
Q |
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| T |
9789650 |
catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggtactatttttcactgcatcta |
9789580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 44504580 - 44504713
Alignment:
| Q |
42 |
tgttcctgcattttctacatgcttatcttaactattcccgcattttttatttgttaatggatataagttatttttcttaaccgttcccacatctcttcaa |
141 |
Q |
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| T |
44504580 |
tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa |
44504679 |
T |
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| Q |
142 |
cctagctgctgctgttgtcagacttctcagatct |
175 |
Q |
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| T |
44504680 |
cttagctgctgctgttgtcagacttttcagatct |
44504713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 31678518 - 31678617
Alignment:
| Q |
102 |
atataagttatttttcttaaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
201 |
Q |
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| T |
31678518 |
atataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggtacgatttttcaccgcatcta |
31678617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 31678375 - 31678441
Alignment:
| Q |
20 |
ggacatgcttattcttcttaattgttcctgcattttctacatgcttatcttaactattcccgcattt |
86 |
Q |
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| T |
31678375 |
ggacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt |
31678441 |
T |
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