View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_280 (Length: 245)
Name: NF9913A_low_280
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_280 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2390524 - 2390292
Alignment:
| Q |
1 |
ttgattgatgctagcgttgtgtgtgtgaccttttcaggttagcttgcatggagggcaagttctttcatggaaaacagaacgcggtgaagagttattgttc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2390524 |
ttgattgatgctagcgttgtgtgtgtgactttttcaggttagcttgcatggagggcaagttctttcatggaaaacagaacgcggtgaagagttattgttc |
2390425 |
T |
|
| Q |
101 |
actagtaccaaggtaaatgaggtttttcgtgtcagatatttcctatgtagcactgacacttcagattaaaggcatgtccggtcacttctataattagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2390424 |
actagtaccaaggtaaatgaggtttttcgtgtcagatatttcctatgtagcactgacacttcagattaaaggcatgtccggtcacttctataattagtat |
2390325 |
T |
|
| Q |
201 |
ttgcgtgtcaatatcggtgttgtgtatgatgta |
233 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
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| T |
2390324 |
ttgcgtgtcagtatcggtgttgtgtatgatgta |
2390292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 35133978 - 35134014
Alignment:
| Q |
144 |
tatgtagcactgacacttcagattaaaggcatgtccg |
180 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||| |
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| T |
35133978 |
tatgtcgcactgacacttgagattaaaggcatgtccg |
35134014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 878450 - 878416
Alignment:
| Q |
144 |
tatgtagcactgacacttcagattaaaggcatgtc |
178 |
Q |
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| T |
878450 |
tatgtagcactgacacttcacattaaaggcatgtc |
878416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 1239727 - 1239693
Alignment:
| Q |
144 |
tatgtagcactgacacttcagattaaaggcatgtc |
178 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
1239727 |
tatgtagcactgacacttcacattaaaggcatgtc |
1239693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 41032670 - 41032708
Alignment:
| Q |
144 |
tatgtagcactgacacttcagattaaaggcatgtccggt |
182 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||| |
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| T |
41032670 |
tatgtagcactgacacttcagattataggcatgttcggt |
41032708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 9276981 - 9276948
Alignment:
| Q |
144 |
tatgtagcactgacacttcagattaaaggcatgt |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
9276981 |
tatgtagcactgacacttcagattgaaggcatgt |
9276948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 25107208 - 25107171
Alignment:
| Q |
143 |
ctatgtagcactgacacttcagattaaaggcatgtccg |
180 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| |
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| T |
25107208 |
ctatgtagcactgacacttcatattgaaggcatgtccg |
25107171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 173
Target Start/End: Complemental strand, 5541926 - 5541897
Alignment:
| Q |
144 |
tatgtagcactgacacttcagattaaaggc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
5541926 |
tatgtagcactgacacttcagattaaaggc |
5541897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 32663642 - 32663679
Alignment:
| Q |
142 |
cctatgtagcactgacacttcagattaaaggcatgtcc |
179 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||| |
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| T |
32663642 |
cctatgtagcacggactcttcagattaaaggcatgtcc |
32663679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 11818226 - 11818258
Alignment:
| Q |
143 |
ctatgtagcactgacacttcagattaaaggcat |
175 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
11818226 |
ctatgtagcactgacacttcagattgaaggcat |
11818258 |
T |
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