View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_29 (Length: 437)
Name: NF9913A_low_29
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 220 - 432
Target Start/End: Original strand, 54085019 - 54085233
Alignment:
| Q |
220 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
319 |
Q |
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| T |
54085019 |
atggttgatgccatgcatcatgtgtgttttagtaataaaaatcagttgtgtttcaattcaacctttgttttagtcttttcctgttatgattccaaatttc |
54085118 |
T |
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| Q |
320 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatat--aaaagag |
417 |
Q |
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| T |
54085119 |
caatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcagatatataaaaaagag |
54085218 |
T |
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| Q |
418 |
tattacttaattaag |
432 |
Q |
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||||||||||||||| |
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| T |
54085219 |
tattacttaattaag |
54085233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 39 - 234
Target Start/End: Original strand, 54084802 - 54084997
Alignment:
| Q |
39 |
ggtggtggaggctatgggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggt |
138 |
Q |
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| T |
54084802 |
ggtggtggaggctatgggcagggctctggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggt |
54084901 |
T |
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| Q |
139 |
tgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagcaggtgtgtacctaaataatgaacatgttagatggttgatgccatg |
234 |
Q |
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| T |
54084902 |
tgatttaaataaaagaaaatcttagactgtttggtgcaataaattagtagctggtgtgtacctaaataatgaacatgttagatggttgatgccatg |
54084997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 202 - 411
Target Start/End: Original strand, 54081596 - 54081802
Alignment:
| Q |
202 |
aaataatgaacatgttagatggttgatgccatgcatcatgtgtgttttagt-aataaaaatcagttgtgtttcaatt-caaccttt-gttttagtctttt |
298 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||| ||||||||||| | |
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| T |
54081596 |
aaataatgaacacgttagatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttct |
54081695 |
T |
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| Q |
299 |
cctgttatgattccaaatttccaatatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctga |
398 |
Q |
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| T |
54081696 |
--tgttatga----aaatttccaatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttga |
54081789 |
T |
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| Q |
399 |
attcagatatata |
411 |
Q |
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||||||||||||| |
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| T |
54081790 |
attcagatatata |
54081802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 54081339 - 54081379
Alignment:
| Q |
6 |
cgggctggttcgggatccggtggtagaagtcgcggtggtgg |
46 |
Q |
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| T |
54081339 |
cgggctggttcgggatcaggtggtagaagtcgcggtggtgg |
54081379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 54081480 - 54081572
Alignment:
| Q |
66 |
ggttatggtgaaggtggtggtgattaattaaggaaaagcatgaattgattgacaaatatatagataatacggttgatttaaataaaagaaaat |
158 |
Q |
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||||||||||||||||| ||||||||||| |||||| ||||||||||| | | | ||| ||| ||||| |||||| |||||||||||||| |
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| T |
54081480 |
ggttatggtgaaggtgggggtgattaattcaggaaatgcatgaattgactaatatataaataactaatatggttgacacaaataaaagaaaat |
54081572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 54081423 - 54081460
Alignment:
| Q |
39 |
ggtggtggaggctatgggcagggctctggttatggtga |
76 |
Q |
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| T |
54081423 |
ggtggtggaggctctgggcagggctctggttatggtga |
54081460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 54084742 - 54084782
Alignment:
| Q |
6 |
cgggctggttcgggatccggtggtagaagtcgcggtggtgg |
46 |
Q |
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| T |
54084742 |
cgggctggttcgggatcaggtggtagaagtcgcagtggtgg |
54084782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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