View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_290 (Length: 244)

Name: NF9913A_low_290
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_290
NF9913A_low_290
[»] chr8 (2 HSPs)
chr8 (86-231)||(21357736-21357881)
chr8 (1-60)||(21357908-21357967)
[»] chr2 (1 HSPs)
chr2 (138-171)||(878162-878195)
[»] chr3 (1 HSPs)
chr3 (126-172)||(34250342-34250388)
[»] chr4 (1 HSPs)
chr4 (126-171)||(27117216-27117261)
[»] chr1 (1 HSPs)
chr1 (93-171)||(31789382-31789462)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 21357881 - 21357736
Alignment:
Q  86 ggaaaggtcttgaaaagagtttataaagagagacctgtcgcctttcaagtcggttttgtaaggacgagttagacccgatataaaaaacttgatacacaat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21357881 ggaaaggtcttgaaaagagtttataaagagagacctgtcgcctttcaagtcggttttgtaaggacgagttagacccgatataaaaaacttgatacacaat 21357782  T
Q  186 gctgagtcagtttagtgtgcacttggctttaatacttgatgtccat 231  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  21357781 gctgagtcagtttagtgtgcacttggctttaatacttggtgtccat 21357736  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21357967 - 21357908
Alignment:
Q  1 gttcttaatgtttcacattattgaaaaaaaacccatgttaaacatttaaaagaggaaagg 60  Q
    ||||| ||||||||||||||||||||| |||||||||||| | |||||||||||||||||    
T  21357967 gttctgaatgtttcacattattgaaaagaaacccatgttatatatttaaaagaggaaagg 21357908  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 878162 - 878195
Alignment:
Q  138 gttttgtaaggacgagttagacccgatataaaaa 171  Q
    ||||||||||||||||||||||||||||||||||    
T  878162 gttttgtaaggacgagttagacccgatataaaaa 878195  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 34250388 - 34250342
Alignment:
Q  126 cctttcaagtcggttttgtaaggacgagttagacccgatataaaaaa 172  Q
    |||| ||||||||||||||||||| ||||||| ||| ||||||||||    
T  34250388 ccttacaagtcggttttgtaaggatgagttaggcccaatataaaaaa 34250342  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 27117261 - 27117216
Alignment:
Q  126 cctttcaagtcggttttgtaaggacgagttagacccgatataaaaa 171  Q
    |||| ||||||||||||||||||| |||||||||||  ||||||||    
T  27117261 ccttacaagtcggttttgtaaggatgagttagacccattataaaaa 27117216  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 31789382 - 31789462
Alignment:
Q  93 tcttgaaaagagtttataaagagag--acctgtcgcctttcaagtcggttttgtaaggacgagttagacccgatataaaaa 171  Q
    |||||| |||||||||||||||| |  |||| || |||| |||| |||||||||||||| || |||| ||| |||||||||    
T  31789382 tcttgataagagtttataaagagtggcacctctcaccttacaagccggttttgtaaggatgaattaggcccaatataaaaa 31789462  T

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