View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_292 (Length: 244)
Name: NF9913A_low_292
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_292 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 12416025 - 12416212
Alignment:
| Q |
7 |
caatgagatggacatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgaca |
102 |
Q |
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| T |
12416025 |
caatgagatg-atatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgaca |
12416123 |
T |
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| Q |
103 |
tgatctagtgcgttattaagacacattaggc--nnnnnnnntctgaagaatttgcttgcaagaaattaagacaggattagtacatatgg |
189 |
Q |
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| T |
12416124 |
tgatctagtgcgttattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatgg |
12416212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 12428085 - 12428272
Alignment:
| Q |
7 |
caatgagatggacatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgaca |
102 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12428085 |
caatgagatg-atatcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgaca |
12428183 |
T |
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| Q |
103 |
tgatctagtgcgttattaagacacattaggc--nnnnnnnntctgaagaatttgcttgcaagaaattaagacaggattagtacatatgg |
189 |
Q |
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| T |
12428184 |
tgatctagtgcgttattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatgg |
12428272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 12402229 - 12402298
Alignment:
| Q |
27 |
aagatgttttacaaacaaaaaacagattttgacatg-----ctggtgagtcacaaacaaatactccatat |
91 |
Q |
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| T |
12402229 |
aagatgttttacaaacaacaaacagattttgacatgctggtctggtgagtcacaaacaaatactccatat |
12402298 |
T |
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