View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_293 (Length: 244)
Name: NF9913A_low_293
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_293 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 2272056 - 2272274
Alignment:
| Q |
26 |
tcaggagaaactgtaggaaaatcgatccacacaaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcaggctcatgtt |
125 |
Q |
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| T |
2272056 |
tcaggagaaactgtaggaaaatcgatccacaagaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcagactcatgtt |
2272155 |
T |
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| Q |
126 |
ggtggcaacccacaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcaccaaac |
225 |
Q |
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| T |
2272156 |
ggtggcaacccgcaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcgccaaac |
2272255 |
T |
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| Q |
226 |
aaatagagacgcctgatga |
244 |
Q |
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| T |
2272256 |
aaatagagacgcctgatga |
2272274 |
T |
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Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 22470 - 22676
Alignment:
| Q |
29 |
ggagaaactgtaggaaaatcgatccacacaaaaatgccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcaggctcatgttggt |
128 |
Q |
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|||||||||||| ||| | |||||||| |||| ||||||||||| || | ||||||| || || | ||| |||| || ||||| || |||||| |
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| T |
22470 |
ggagaaactgtaataaatccaatccacaccaaaacatcgctccataagaaatcgaacaaaggacgttgtaaaaaaagatgctttgcagacttttgttggc |
22569 |
T |
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| Q |
129 |
ggcaacccacaacacaaaattgagcatccggatgaataatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcaccaaacaaa |
228 |
Q |
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| T |
22570 |
cgcaacccacgacataaaattgagcatcctgatgaagaattcctcgcttgcataaattgttctttgtaggcaatctatttcgaagtagtcaccaaacaaa |
22669 |
T |
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| Q |
229 |
tagagac |
235 |
Q |
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|||||| |
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| T |
22670 |
cagagac |
22676 |
T |
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