View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_298 (Length: 243)
Name: NF9913A_low_298
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_298 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6916419 - 6916641
Alignment:
| Q |
1 |
aatgatcaggatgaagatgattctgtcataacagctcaggtccatcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagg |
100 |
Q |
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|||| |||||| |||||| |||||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916419 |
aatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagg |
6916518 |
T |
|
| Q |
101 |
gtgaattcacaagggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgata |
200 |
Q |
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| T |
6916519 |
gtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgata |
6916618 |
T |
|
| Q |
201 |
tggcctttcaagtacacggtcct |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6916619 |
tggcctttcaagtacacggtcct |
6916641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
91 |
cagggaaagggtgaattcacaagggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
190 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
|
| Q |
191 |
ctgaatgat |
199 |
Q |
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||||||||| |
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| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 15036196 - 15036138
Alignment:
| Q |
36 |
tcaggtccatcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
94 |
Q |
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|||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
15036196 |
tcaggtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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