View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_302 (Length: 242)
Name: NF9913A_low_302
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_302 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 31171114 - 31170888
Alignment:
| Q |
16 |
tggacatcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttcctttt |
115 |
Q |
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| T |
31171114 |
tggacatcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttcctttt |
31171015 |
T |
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| Q |
116 |
ccctccttaagatctctgttcgtaagataatttcataatgtcgtannnnnnncctttctgctcaatggctactaatttatgacaaacaattttgagcaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31171014 |
ccctccttaagatctctgttcgtaagataatttcataatgtcgtattttttccctttctgctcgatggctactaatttatgacaaacaattttgagcaaa |
31170915 |
T |
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| Q |
216 |
tatcacttgctttttaacttttcatac |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31170914 |
tatcacttgctttttaacttttcatac |
31170888 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 35224494 - 35224424
Alignment:
| Q |
16 |
tggacatcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggcc |
86 |
Q |
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|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35224494 |
tggacatctgctgcacagctatcattactcgaagatgaaatgcgccgtatagaaagagtcaatgtaaggcc |
35224424 |
T |
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