View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_304 (Length: 242)
Name: NF9913A_low_304
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_304 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 23211059 - 23211199
Alignment:
| Q |
1 |
taattagtcagtcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccacattgggtcaagaataaccatataaatg |
100 |
Q |
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| T |
23211059 |
taatgagtcattcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccacattgggtcaagaataaccatataaatg |
23211158 |
T |
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| Q |
101 |
agttggacacttcaacttaaccctacaagtatctacgcaac |
141 |
Q |
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| T |
23211159 |
agttggacacttcaacttaaccctacaagtatctacgcaac |
23211199 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 41038977 - 41039019
Alignment:
| Q |
67 |
catccacattgggtcaagaataaccatataaatgagttggaca |
109 |
Q |
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| T |
41038977 |
catccgcattgggtcaagaataaccatgtaaatgagttagaca |
41039019 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 47157690 - 47157597
Alignment:
| Q |
30 |
tgatatcactgtaggatcatcaggggagctcga-gaaacatccacattgggtcaagaataaccatataaatgagttggacacttcaacttaacc |
122 |
Q |
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| T |
47157690 |
tgataccactgttggatcatgaggggagccagatgaatcatccaaattgggtcaagaacaatcacacaaatgagttggatactgcatcttaacc |
47157597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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