View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_309 (Length: 241)

Name: NF9913A_low_309
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_309
NF9913A_low_309
[»] scaffold0118 (1 HSPs)
scaffold0118 (122-228)||(9790-9896)
[»] chr4 (4 HSPs)
chr4 (17-118)||(5145705-5145806)
chr4 (17-118)||(9226590-9226691)
chr4 (17-118)||(18858373-18858474)
chr4 (17-118)||(16626182-16626283)
[»] scaffold0006 (2 HSPs)
scaffold0006 (17-118)||(305-406)
scaffold0006 (17-118)||(8461-8562)
[»] chr7 (6 HSPs)
chr7 (17-118)||(16882724-16882825)
chr7 (17-118)||(21986717-21986818)
chr7 (17-118)||(24263512-24263613)
chr7 (17-118)||(21643834-21643935)
chr7 (17-118)||(9187334-9187435)
chr7 (28-118)||(18411454-18411544)
[»] chr5 (9 HSPs)
chr5 (17-118)||(33789153-33789254)
chr5 (17-118)||(24557773-24557874)
chr5 (17-118)||(24598805-24598906)
chr5 (17-118)||(27447620-27447721)
chr5 (17-118)||(43594918-43595019)
chr5 (17-118)||(43627712-43627813)
chr5 (17-118)||(31399181-31399282)
chr5 (17-118)||(37558791-37558892)
chr5 (27-114)||(28836103-28836189)
[»] chr3 (6 HSPs)
chr3 (17-118)||(3325727-3325828)
chr3 (17-118)||(8514891-8514992)
chr3 (17-118)||(32478137-32478238)
chr3 (17-118)||(1308668-1308769)
chr3 (18-118)||(2674410-2674510)
chr3 (52-118)||(22170532-22170598)
[»] chr8 (4 HSPs)
chr8 (10-118)||(26299170-26299278)
chr8 (17-118)||(10686453-10686554)
chr8 (17-118)||(18867859-18867960)
chr8 (17-118)||(35743186-35743287)
[»] scaffold0197 (1 HSPs)
scaffold0197 (17-118)||(16498-16599)
[»] chr6 (3 HSPs)
chr6 (17-118)||(14739761-14739862)
chr6 (17-118)||(33333265-33333366)
chr6 (27-118)||(24433519-24433610)
[»] chr2 (3 HSPs)
chr2 (17-118)||(19347075-19347176)
chr2 (17-118)||(25393683-25393784)
chr2 (75-118)||(39485468-39485511)
[»] chr1 (1 HSPs)
chr1 (17-118)||(41396036-41396137)
[»] scaffold0078 (1 HSPs)
scaffold0078 (17-118)||(34807-34908)


Alignment Details
Target: scaffold0118 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 9896 - 9790
Alignment:
Q  122 tttcaaactttaaagcagacttggaacttatttgaaaaatggtgatgacggcgtgatcatataagttggagtatgctatgggttttaaaggagacgagaa 221  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||    
T  9896 tttcaaactttaaagcaggcttggaacttatttgaaaaatggtgatgatggcgtgatcatgtatgttggagtatgctatgggttttaaaggagatgagaa 9797  T
Q  222 caccata 228  Q
    |||||||    
T  9796 caccata 9790  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 5145806 - 5145705
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  5145806 catcaacgacaatagacttcaagacacctatggaagtatggaatgggaaaccggcagactactcatctttgaaggttttcggagctttggcatatgcgca 5145707  T
Q  117 ta 118  Q
    ||    
T  5145706 ta 5145705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 9226590 - 9226691
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  9226590 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 9226689  T
Q  117 ta 118  Q
    ||    
T  9226690 ta 9226691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 18858474 - 18858373
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  18858474 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 18858375  T
Q  117 ta 118  Q
    ||    
T  18858374 ta 18858373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 16626182 - 16626283
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| ||||||||||||||| |||||||| ||||||||||    
T  16626182 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcttctttgaaggttttctgagctttgacatatgcgca 16626281  T
Q  117 ta 118  Q
    ||    
T  16626282 ta 16626283  T

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Target: scaffold0006 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 406 - 305
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||| | |||||||||||||||||||||||||||||||| ||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  406 catcaacaggaatagacttcaagacacctatggaagtatggagtgggaaagcggcagattactcatctttgaaggttttcggagctttggcatatgcgca 307  T
Q  117 ta 118  Q
    ||    
T  306 ta 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 8562 - 8461
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||| | |||||||||||||||||||||||||||||||| ||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  8562 catcaacaggaatagacttcaagacacctatggaagtatggagtgggaaagcggcagattactcatctttgaaggttttcggagctttggcatatgcgca 8463  T
Q  117 ta 118  Q
    ||    
T  8462 ta 8461  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 16882825 - 16882724
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  16882825 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 16882726  T
Q  117 ta 118  Q
    ||    
T  16882725 ta 16882724  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 21986818 - 21986717
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||| |||||||||||||||||||||| ||||||||||||||| ||    
T  21986818 catcaacggcaatagacttcaagacacctatggaagtatggagtgggaaatcggcagactactcatctttgaaggttttcgaagctttggcatatgcaca 21986719  T
Q  117 ta 118  Q
    ||    
T  21986718 ta 21986717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 24263512 - 24263613
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  24263512 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 24263611  T
Q  117 ta 118  Q
    ||    
T  24263612 ta 24263613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 21643935 - 21643834
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||   |||||||| |||||||||||||||||||||||||||||||||||    
T  21643935 catcaacgggtatagacttcaagacacctatggaggtatggagtgggaaaccggctgattactcctctttgaaggttttcggagctttggcatatgcgca 21643836  T
Q  117 ta 118  Q
    ||    
T  21643835 ta 21643834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 9187334 - 9187435
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  | | |||||||||||||||||||| ||||||||||||||||||||    
T  9187334 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcaaactactcatctttgaaggtttttggagctttggcatatgcgca 9187433  T
Q  117 ta 118  Q
    ||    
T  9187434 ta 9187435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 18411544 - 18411454
Alignment:
Q  28 atagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgcata 118  Q
    ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  18411544 atagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcttctttgaaggtttttggagctttgacatatgcgcata 18411454  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 33789254 - 33789153
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  33789254 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggtggattactcctctttgaaggttttcggagctttggcatatgcgca 33789155  T
Q  117 ta 118  Q
    ||    
T  33789154 ta 33789153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 24557773 - 24557874
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||    
T  24557773 catcaacgggaataaacttcaagacacctatggaagtatggagtgggaaaccggcagattactcatcattgaaggtttttggagctttggcatatgcgca 24557872  T
Q  117 ta 118  Q
    ||    
T  24557873 ta 24557874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 24598805 - 24598906
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||    
T  24598805 catcaacgggaataaacttcaagacacctatggaagtatggagtgggaaaccggcagattactcatcattgaaggtttttggagctttggcatatgcgca 24598904  T
Q  117 ta 118  Q
    ||    
T  24598905 ta 24598906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 27447721 - 27447620
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  27447721 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 27447622  T
Q  117 ta 118  Q
    ||    
T  27447621 ta 27447620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 43595019 - 43594918
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  43595019 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 43594920  T
Q  117 ta 118  Q
    ||    
T  43594919 ta 43594918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 43627813 - 43627712
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  43627813 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 43627714  T
Q  117 ta 118  Q
    ||    
T  43627713 ta 43627712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 31399181 - 31399282
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||    ||||||| |||||||||||||||||||||||||||||||||||    
T  31399181 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcgaattactcctctttgaaggttttcggagctttggcatatgcgca 31399280  T
Q  117 ta 118  Q
    ||    
T  31399281 ta 31399282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 37558791 - 37558892
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  |||||||||||||||| |||||| ||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  37558791 catcaacggggatagacttcaagacacttatggaggtatggagtgggaaaccggtggattactcctctttgaaggttttcggagctttggcatatgcgca 37558890  T
Q  117 ta 118  Q
    ||    
T  37558891 ta 37558892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 28836189 - 28836103
Alignment:
Q  27 aatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcg 114  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  28836189 aatagacttcaagacacctatggaagtatggagtgggaaaccggtagattactcatctttgatggttttcggagcttt-gcatatgcg 28836103  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 3325727 - 3325828
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  3325727 catcaacgggaatagacttcaagacacctatggaagtatggagtgggaaactagaagattactcatctttgaaggttttcggagctttggcatatgcgca 3325826  T
Q  117 ta 118  Q
    ||    
T  3325827 ta 3325828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 8514992 - 8514891
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  8514992 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 8514893  T
Q  117 ta 118  Q
    ||    
T  8514892 ta 8514891  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 32478238 - 32478137
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  32478238 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 32478139  T
Q  117 ta 118  Q
    ||    
T  32478138 ta 32478137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 1308769 - 1308668
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  1308769 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcttctttgaaggttttcggagctttggcatatgcgca 1308670  T
Q  117 ta 118  Q
    ||    
T  1308669 ta 1308668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 2674410 - 2674510
Alignment:
Q  18 atcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgcat 117  Q
    |||||||  |||| ||||| ||||||||||||| ||||||| ||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||    
T  2674410 atcaacgagaataaacttctagacacctatggaggtatggagtgggaaaccggcggattactcctctttgaaggttttcggagctttggcatatgcgcat 2674509  T
Q  118 a 118  Q
    |    
T  2674510 a 2674510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 22170532 - 22170598
Alignment:
Q  52 gtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgcata 118  Q
    ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22170532 gtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgcata 22170598  T

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Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 26299278 - 26299170
Alignment:
Q  10 agatggacatcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcat 109  Q
    |||||| |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  26299278 agatggccatcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcttctttgaaggttttcggagctttggcat 26299179  T
Q  110 atgcgcata 118  Q
    |||||||||    
T  26299178 atgcgcata 26299170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 10686453 - 10686554
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  10686453 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 10686552  T
Q  117 ta 118  Q
    ||    
T  10686553 ta 10686554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 18867859 - 18867960
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||    
T  18867859 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaatgttttcggagctttggcatatgcgca 18867958  T
Q  117 ta 118  Q
    ||    
T  18867959 ta 18867960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 35743287 - 35743186
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||   |||||||| |||||||||||||||||||||||||||||||||||    
T  35743287 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcggattactcctctttgaaggttttcggagctttggcatatgcgca 35743188  T
Q  117 ta 118  Q
    ||    
T  35743187 ta 35743186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 16498 - 16599
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  16498 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 16597  T
Q  117 ta 118  Q
    ||    
T  16598 ta 16599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 14739761 - 14739862
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  14739761 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcctctttgaaggttttcggagctttggcatatgcgca 14739860  T
Q  117 ta 118  Q
    ||    
T  14739861 ta 14739862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 33333265 - 33333366
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||   |||||||| |||||||||||||||||||||||||||||||||||    
T  33333265 catcaacgggaatagacttcaagatacctatggaggtatggagtgggaaaccggcggattactcctctttgaaggttttcggagctttggcatatgcgca 33333364  T
Q  117 ta 118  Q
    ||    
T  33333365 ta 33333366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 24433519 - 24433610
Alignment:
Q  27 aatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgcata 118  Q
    ||||||||||||||| ||||| |||  |||||  ||||||||   |  |||||||||||||||||||||||||| |||| ||||||||||||    
T  24433519 aatagacttcaagacgcctattgaaaaatggagcgggaaaccagcaatttactcatctttgaaggttttcggagttttgacatatgcgcata 24433610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 19347176 - 19347075
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||   |||||||| |||||||||||||||||||||||||||||||||||    
T  19347176 catcaacgggaatagacttcaagacacctatggaggtatggagtgggaaaccggcggattactcctctttgaaggttttcggagctttggcatatgcgca 19347077  T
Q  117 ta 118  Q
    ||    
T  19347076 ta 19347075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 25393784 - 25393683
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||||| ||    
T  25393784 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaaccggcagattactcatctttgaaggtttacggagctttggcatatgcaca 25393685  T
Q  117 ta 118  Q
    ||    
T  25393684 ta 25393683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 39485468 - 39485511
Alignment:
Q  75 ttactcatctttgaaggttttcggagctttggcatatgcgcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39485468 ttactcatctttgaaggttttcggagctttggcatatgcgcata 39485511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 41396137 - 41396036
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    |||||||||  ||||||||||||||||||||||| ||||||| |||||||||   ||||||||| |||||||||||||||||||||||||||||||||||    
T  41396137 catcaacggggatagacttcaagacacctatggaggtatggagtgggaaacccgcagattactcctctttgaaggttttcggagctttggcatatgcgca 41396038  T
Q  117 ta 118  Q
    ||    
T  41396037 ta 41396036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 34908 - 34807
Alignment:
Q  17 catcaacggcaatagacttcaagacacctatggaagtatggaatgggaaaccgatagattactcatctttgaaggttttcggagctttggcatatgcgca 116  Q
    ||||||||| |||| |||||| || ||||||||||||||||| ||||||||  ||    ||||||||| |||||||| ||  || |||||||||||||||    
T  34908 catcaacgggaataaacttcaggatacctatggaagtatggagtgggaaactaatgttctactcatctatgaaggttctctaagatttggcatatgcgca 34809  T
Q  117 ta 118  Q
    ||    
T  34808 ta 34807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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