View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_310 (Length: 241)
Name: NF9913A_low_310
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_310 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0031 (2 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 29067072 - 29066839
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttctttcnnnnnnn-gtttttgacagagtattgctgatagagtttagaaagaacatatttttgctagagtat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
29067072 |
ggtgttcaagtttttgagagagtattctttcttttaaaaaaaagtttttgacagagtattgctgatagagtttagaaagaacgtatttttgctcgagtat |
29066973 |
T |
|
| Q |
108 |
tttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatggtgctaatattttccacaatgacataaataaatcatgacattataat |
207 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
29066972 |
tttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatggtgctaatattttccaaaatgacataaataaatcatgacattataat |
29066873 |
T |
|
| Q |
208 |
aaggctttgtccttcaattgatattaaagttaag |
241 |
Q |
| |
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|||| ||||||||||||| | |||||||||||| |
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| T |
29066872 |
caggcattgtccttcaattaagattaaagttaag |
29066839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 13916175 - 13915951
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttctttc-nnnnnnngtttttgacagagtattgctgatagagtttagaaagaacatatttttgctagagtat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||| |||||||| |
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| T |
13916175 |
ggtgttcaagtttttgagagagtattctttctttcaaaaaaaagtttttgac---------ctgatagagtttagaaacaacgtatttttggtagagtat |
13916085 |
T |
|
| Q |
108 |
tttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatggtgctaatattttccacaatgacataaataaatcatgacattataat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
13916084 |
tttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatggtgctaatattttccaaaatgacattaataaatcatgacattataat |
13915985 |
T |
|
| Q |
208 |
aaggctttgtccttcaattgatattaaagttaag |
241 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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|
| T |
13915984 |
cgggcattgtccttcaattgatattaaagttaag |
13915951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 61 - 204
Target Start/End: Original strand, 17320772 - 17320915
Alignment:
| Q |
61 |
gagtattgctgatagagtttagaaagaacatatttttgctagagtattttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatg |
160 |
Q |
| |
|
||||| |||| |||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
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| T |
17320772 |
gagtactgcttatagagtttagagagaaagtattttggctagagtattttcttccactaaagtctcaaaggatgtgattgaaactatttatagaaatatt |
17320871 |
T |
|
| Q |
161 |
gtgctaatattttccacaatgacataaataaatcatgacattat |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
17320872 |
gtgctaatattttccaaaatgacataaataaatcatgactttat |
17320915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 17320727 - 17320761
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttctttc |
43 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
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| T |
17320727 |
ggtgttcaaatttttgagagagtattctttctttc |
17320761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 22283194 - 22283058
Alignment:
| Q |
72 |
atagagtttagaaagaacatatttttgctagagtattttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatggtgctaatatt |
171 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22283194 |
atagagtttagagagaaagtattttggctagagtattttcttccactaaagtctcaaagggtgtgattgaaactatttatagaaatattgtgctaatatt |
22283095 |
T |
|
| Q |
172 |
ttccacaatgacataaataaatcatgacattataata |
208 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
22283094 |
ttccaaaatgacataaataaatcatgactttataata |
22283058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 22262863 - 22262813
Alignment:
| Q |
100 |
tagagtattttcttccactcaagtctcaaaaggtgtgattgaaactattta |
150 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22262863 |
tagagtaatttcttacactcaagtctcaaaaggtgtgattgaaactattta |
22262813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 22262693 - 22262635
Alignment:
| Q |
145 |
tatttatagaaatatggtgctaatattttcc-acaatgacataaataaatcatgacatt |
202 |
Q |
| |
|
|||||| | |||||||||||||||||||||| | ||| ||||||||||||||||||||| |
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|
| T |
22262693 |
tatttaaataaatatggtgctaatattttccaaaaattacataaataaatcatgacatt |
22262635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 22283250 - 22283216
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttctttc |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
22283250 |
ggtgttcaagtttttgagagagtattctttctttc |
22283216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 22262940 - 22262906
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttctttc |
43 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
22262940 |
ggtgttcaagtttttgagagagtaatctttctttc |
22262906 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 15777705 - 15777810
Alignment:
| Q |
51 |
gtttttgacagagtattgctgatagagtttagaaagaacatatttttgctagagtattttcttccactcaagtctcaaaaggtgtgattgaaactattta |
150 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15777705 |
gtttttgacagtgtattgctgatagagtttagaaagaacgtatttttgctagagtattttcttccactcaagtctcaaaaggtgtgattgaaactattta |
15777804 |
T |
|
| Q |
151 |
tagaaa |
156 |
Q |
| |
|
|||||| |
|
|
| T |
15777805 |
tagaaa |
15777810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 15777925 - 15777986
Alignment:
| Q |
145 |
tatttatagaaatatggtgctaatattttccacaatgacataaataaatcatgacattataa |
206 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15777925 |
tatttaaataaatatggtgctaatattttccaaaatgacataaataaatcatgacattataa |
15777986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 84964 - 84821
Alignment:
| Q |
61 |
gagtattgctgatagagtttagaaagaacatatttttgctagagtattttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatg |
160 |
Q |
| |
|
||||| |||| |||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |
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| T |
84964 |
gagtaatgcttatagagtttagagagaaagtattttggctagagtattttcttccactaaagtctcaaagggtgtgattgaaactaattatagaaatatt |
84865 |
T |
|
| Q |
161 |
gtgctaatattttccacaatgacataaataaatcatgacattat |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
84864 |
gtgctaatattttccaaaatgacataaataaatcatgactttat |
84821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 85009 - 84975
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttctttc |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
85009 |
ggtgttcaagtttttgagagagtattctttctttc |
84975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 24021669 - 24021801
Alignment:
| Q |
61 |
gagtattgctgatagagtttagaaagaacatatttttgctagagtattttcttccactcaagtctcaaaaggtgtgattgaaactatttatagaaatatg |
160 |
Q |
| |
|
||||| |||| |||||||||||| |||| |||||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24021669 |
gagtactgcttatagagtttagagagaaagtattttgggtagagtattttcttccactaaagtctcaaagggtgtgattgaaactatttatagaaatatt |
24021768 |
T |
|
| Q |
161 |
gtgctaatattttccacaatgacataaataaat |
193 |
Q |
| |
|
|| ||| ||||||||| |||||||||||||||| |
|
|
| T |
24021769 |
gtactactattttccaaaatgacataaataaat |
24021801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 24032904 - 24032954
Alignment:
| Q |
100 |
tagagtattttcttccactcaagtctcaaaaggtgtgattgaaactattta |
150 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24032904 |
tagagtaatttcttacactcaagtctcaaaaggtgtgattgaaactattta |
24032954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 24033091 - 24033140
Alignment:
| Q |
154 |
aaatatggtgctaatattttcc-acaatgacataaataaatcatgacatt |
202 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
24033091 |
aaatatggtgctaatattttccaaaaattacataaataaatcatgacatt |
24033140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 24021624 - 24021654
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttc |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24021624 |
ggtgttcaagtttttgagagagtattctttc |
24021654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 24032827 - 24032861
Alignment:
| Q |
9 |
ggtgttcaagtttttgagagagtattctttctttc |
43 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
24032827 |
ggtgttcaagtttttgagagagtaatctttctttc |
24032861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 9008 - 8950
Alignment:
| Q |
145 |
tatttatagaaatatggtgctaatattttccacaa-tgacataaataaatcatgacatt |
202 |
Q |
| |
|
|||||| | |||||||||||||||||||| || || | ||||||||||||||||||||| |
|
|
| T |
9008 |
tatttaaataaatatggtgctaatatttttcaaaaattacataaataaatcatgacatt |
8950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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