View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_311 (Length: 241)

Name: NF9913A_low_311
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_311
NF9913A_low_311
[»] chr4 (17 HSPs)
chr4 (96-228)||(40390972-40391104)
chr4 (94-215)||(38377891-38378011)
chr4 (10-99)||(40391556-40391645)
chr4 (115-222)||(784061-784168)
chr4 (96-229)||(15025860-15025991)
chr4 (123-225)||(11672485-11672586)
chr4 (96-220)||(48282800-48282920)
chr4 (117-186)||(15882103-15882172)
chr4 (10-99)||(40380215-40380304)
chr4 (117-181)||(10574064-10574128)
chr4 (96-229)||(6449624-6449756)
chr4 (96-187)||(23410332-23410424)
chr4 (96-229)||(33610026-33610159)
chr4 (117-186)||(52123652-52123721)
chr4 (128-229)||(31049959-31050061)
chr4 (142-229)||(20403240-20403328)
chr4 (96-172)||(35414570-35414646)
[»] chr8 (17 HSPs)
chr8 (98-229)||(12596936-12597067)
chr8 (96-229)||(10467436-10467570)
chr8 (114-227)||(32797017-32797130)
chr8 (113-229)||(39344665-39344781)
chr8 (96-219)||(26938819-26938941)
chr8 (117-229)||(33038297-33038408)
chr8 (113-229)||(17219673-17219790)
chr8 (117-183)||(17153669-17153735)
chr8 (96-223)||(8026105-8026231)
chr8 (114-189)||(42023957-42024032)
chr8 (114-218)||(33695214-33695318)
chr8 (116-203)||(16483876-16483963)
chr8 (117-183)||(17156948-17157014)
chr8 (135-224)||(24916031-24916119)
chr8 (96-170)||(35054983-35055057)
chr8 (117-154)||(17143142-17143179)
chr8 (127-220)||(24292165-24292257)
[»] chr5 (19 HSPs)
chr5 (96-229)||(16089767-16089900)
chr5 (96-229)||(15070000-15070134)
chr5 (96-229)||(19343634-19343767)
chr5 (96-229)||(36235836-36235969)
chr5 (96-229)||(5459091-5459223)
chr5 (94-189)||(1298817-1298911)
chr5 (96-226)||(26724196-26724327)
chr5 (115-202)||(38948632-38948719)
chr5 (133-195)||(6502283-6502345)
chr5 (177-225)||(35270758-35270806)
chr5 (114-229)||(38607378-38607494)
chr5 (115-222)||(30403539-30403647)
chr5 (142-229)||(14820414-14820501)
chr5 (197-228)||(26188812-26188843)
chr5 (133-188)||(34005654-34005709)
chr5 (134-229)||(34784027-34784121)
chr5 (164-226)||(39058478-39058540)
chr5 (104-161)||(39057143-39057200)
chr5 (135-227)||(5159469-5159561)
[»] chr3 (15 HSPs)
chr3 (96-229)||(44446805-44446938)
chr3 (96-229)||(28769459-28769592)
chr3 (94-189)||(50334584-50334679)
chr3 (96-229)||(34359413-34359546)
chr3 (96-229)||(20314970-20315101)
chr3 (114-229)||(38673254-38673370)
chr3 (115-229)||(44648123-44648235)
chr3 (96-203)||(52423102-52423210)
chr3 (115-229)||(39340853-39340965)
chr3 (123-227)||(17268915-17269020)
chr3 (112-183)||(41544534-41544605)
chr3 (150-224)||(45743817-45743891)
chr3 (166-211)||(2382870-2382915)
chr3 (96-161)||(20336927-20336992)
chr3 (177-229)||(16876466-16876518)
[»] chr6 (14 HSPs)
chr6 (95-229)||(17957112-17957246)
chr6 (96-219)||(17157991-17158114)
chr6 (96-223)||(6197898-6198025)
chr6 (123-223)||(10313395-10313495)
chr6 (114-229)||(4254508-4254623)
chr6 (96-229)||(24672352-24672483)
chr6 (96-216)||(4408948-4409058)
chr6 (149-229)||(34187125-34187205)
chr6 (113-229)||(30465127-30465243)
chr6 (109-200)||(12611904-12611994)
chr6 (157-229)||(10516584-10516655)
chr6 (96-203)||(5644646-5644753)
chr6 (171-229)||(2538638-2538695)
chr6 (96-154)||(12338950-12339008)
[»] chr7 (14 HSPs)
chr7 (95-229)||(20132136-20132270)
chr7 (115-223)||(28098618-28098727)
chr7 (96-229)||(13009317-13009451)
chr7 (119-229)||(11297840-11297951)
chr7 (116-189)||(34471348-34471421)
chr7 (96-229)||(27567617-27567752)
chr7 (117-203)||(48696447-48696532)
chr7 (96-229)||(30851589-30851722)
chr7 (108-227)||(33991899-33992019)
chr7 (141-189)||(39596738-39596786)
chr7 (96-154)||(22485125-22485182)
chr7 (135-229)||(25067734-25067828)
chr7 (116-229)||(25411518-25411631)
chr7 (135-211)||(12925313-12925389)
[»] chr1 (9 HSPs)
chr1 (96-229)||(33752913-33753046)
chr1 (100-229)||(20986010-20986141)
chr1 (96-183)||(29307555-29307642)
chr1 (117-229)||(13392892-13393006)
chr1 (96-229)||(16545363-16545495)
chr1 (140-220)||(37470903-37470983)
chr1 (96-183)||(29102970-29103057)
chr1 (96-154)||(23230836-23230894)
chr1 (97-162)||(35218150-35218215)
[»] chr2 (13 HSPs)
chr2 (96-229)||(35954306-35954440)
chr2 (124-229)||(34904093-34904198)
chr2 (114-229)||(8794655-8794770)
chr2 (109-229)||(10077686-10077808)
chr2 (96-229)||(39293064-39293196)
chr2 (114-229)||(30640995-30641111)
chr2 (115-229)||(6191172-6191285)
chr2 (115-229)||(24490520-24490638)
chr2 (104-229)||(31994684-31994809)
chr2 (129-228)||(855648-855752)
chr2 (96-228)||(29242513-29242646)
chr2 (104-203)||(27694475-27694574)
chr2 (134-221)||(434511-434598)
[»] scaffold0233 (1 HSPs)
scaffold0233 (114-219)||(16894-16999)
[»] scaffold0020 (1 HSPs)
scaffold0020 (114-229)||(152141-152256)
[»] scaffold0005 (1 HSPs)
scaffold0005 (94-229)||(253697-253831)
[»] scaffold0478 (1 HSPs)
scaffold0478 (117-183)||(3352-3418)
[»] scaffold0036 (1 HSPs)
scaffold0036 (115-226)||(48396-48509)
[»] scaffold1911 (1 HSPs)
scaffold1911 (117-183)||(113-179)
[»] scaffold0720 (2 HSPs)
scaffold0720 (114-229)||(5440-5551)
scaffold0720 (108-145)||(7458-7495)
[»] scaffold0002 (1 HSPs)
scaffold0002 (135-211)||(363064-363140)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 40391104 - 40390972
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40391104 tttagtccctacaaattttttattcacttttagtccctatttgcattttatagggactattttggagaactaaaagtattcattttttgtaaaatgtttt 40391005  T
Q  196 aaaaatagagattattcttacaaactacaatat 228  Q
    ||||||||||| |||||||||||||||||||||    
T  40391004 aaaaatagagactattcttacaaactacaatat 40390972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 38378011 - 38377891
Alignment:
Q  94 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtt 193  Q
    |||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||| |||    
T  38378011 aatttagtcctta-aaattttttattcacttttattccctatttgcattttatagggactattttggaggactaaaagtgttcattttttataaaaagtt 38377913  T
Q  194 ttaaaaatagagattattctta 215  Q
    || ||||||| || ||||||||    
T  38377912 tttaaaatagggactattctta 38377891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 40391645 - 40391556
Alignment:
Q  10 aagaagatttggtaatcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 99  Q
    |||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||  || |||||||||||||||||||||    
T  40391645 aagaggatttggtaatcagtaaaatgaggagtaaaaaaattgagataataatgtgataattcaatagatagatgtatataattcaattta 40391556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 784061 - 784168
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 214  Q
    |||||||||||||||  |||||| ||||||||| |||||| ||||||  ||||||| ||| |||||||||||||| ||||| ||||||| ||||||| ||    
T  784061 ttattcacttttagtttctattttcattttatacggactattttggatgactaaaaatatccattttttgtaaaaagttttcaaaatagggattattttt 784160  T
Q  215 acaaacta 222  Q
    | ||||||    
T  784161 agaaacta 784168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 15025991 - 15025860
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||||   |||||||| |||||||||||||||  |||||||| |||||| ||||||| ||| ||||||| || ||||||||||| |||||    
T  15025991 tttagtccctacaaaaattttattcatttttagtccctatttatattttataaggactattttggaggact-aaagtataca-tttttgtaaaaagtttt 15025894  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||||| || |||| | |||||||| ||||||    
T  15025893 caaaatagggactattatcacaaactataatatt 15025860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 11672485 - 11672586
Alignment:
Q  123 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaacta 222  Q
    ||||||||  |||||  ||||||||||||||| |||| || ||||||||||| || |||||||||  | |||| |||||||||| |||||||||||||||    
T  11672485 ttttagtctttatttatattttatagggactattttgcaggactaaaagtataca-tttttgtaatttttttttaaaatagagactattcttacaaacta 11672583  T
Q  223 caa 225  Q
    |||    
T  11672584 caa 11672586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 48282920 - 48282800
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||||  |||||||||||||||||||    || |||||||||| ||||| ||| ||| ||||||| |||  ||||||||||||| |||||    
T  48282920 tttagtccctacaaaaaatttattcacttttagtcc---attacattttatagagactattttagaggactaaaaatatctattttttgtaaaa-gtttt 48282825  T
Q  196 aaaaatagagattattcttacaaac 220  Q
      ||||| ||| |||||||||||||    
T  48282824 ttaaataaagactattcttacaaac 48282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 15882103 - 15882172
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgta 186  Q
    |||||||||||||||||||||| |||||| ||||||||  |||||| ||||||| ||| |||||||||||    
T  15882103 attcacttttagtccctatttgtattttagagggactatcttggaggactaaaactatccattttttgta 15882172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 40380304 - 40380215
Alignment:
Q  10 aagaagatttggtaatcattaaaatgaggagtaaaaaacgtgagataataatgtgataattcaaccgagagatgtatataattcaattta 99  Q
    |||| ||||||||||||| |||| ||| |||||||||| ||||||| ||| |||||||||||||   ||||||| |||| ||||||||||    
T  40380304 aagaggatttggtaatcagtaaagtgaagagtaaaaaaagtgagattatattgtgataattcaataaagagatgaatatgattcaattta 40380215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 10574128 - 10574064
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttt 181  Q
    |||||| |||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||||    
T  10574128 attcacctttagtccctatttgcattttacagggactattttggaggactaaaaatatccatttt 10574064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 6449624 - 6449756
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||| ||||||  ||||||||||||||||||  |||||| |||| |||  ||||| |||| |  ||||||||| | ||| ||||| |||| |||||    
T  6449624 tttagtccttacaaaaaatttattcacttttagtcgatatttgtattt-ataaagactattttgaaagactaaaagtgtccatcttttgcaaaaagtttt 6449722  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||||| || |||| |||||||||||| ||||    
T  6449723 taaaatagggactatttttacaaactacattatt 6449756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 23410332 - 23410424
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattt-tatagggactagtttggagaactaaaagtattcattttttgtaa 187  Q
    |||||||||||||||  || |||||||||||| ||  ||||||||||| |||| | |||| ||||||| |||||||||||  |||||||||||    
T  23410332 tttagtccctacaaaaaatatattcacttttattctttatttgcatttatatatgaactattttggaggactaaaagtatatattttttgtaa 23410424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 33610159 - 33610026
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||| ||||| ||| | ||||| |||||||||| | |||||| || ||||  |||||| ||  ||| |||||| |||  ||||||||| |||| |||||    
T  33610159 tttagaccctataaaatttttatccacttttagttcttatttggatattatttggactatttcagaggactaaacgtagacattttttgcaaaaagtttt 33610060  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||||  || |||||||| |||||||||||||    
T  33610059 caaaataaggactattcttataaactacaatatt 33610026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 52123652 - 52123721
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgta 186  Q
    ||||||||||| |  ||||||| ||||||||| ||||| ||||||| ||||||||||| ||| |||||||    
T  52123652 attcacttttaatatctatttgtattttatagagactattttggaggactaaaagtatccatattttgta 52123721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 31049959 - 31050061
Alignment:
Q  128 gtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattcttacaaactacaat 226  Q
    |||| ||||| ||||| |||| ||||| ||||||||||||||| | | || |||||||||||| ||||| ||||||  || |||  |||||| |||||||    
T  31049959 gtccatatttacatttcatagagactattttggagaactaaaaatgtccatttttttgtaaaaggttttcaaaataatgactatctttacaagctacaat 31050058  T
Q  227 att 229  Q
    |||    
T  31050059 att 31050061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 20403328 - 20403240
Alignment:
Q  142 tttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    ||||||||||||| | ||||| | ||||| ||| |||||||| |||||| ||||| | | ||| || ||||||||||||||| ||||||    
T  20403328 tttatagggactattgtggaggaataaaaatatccatttttttgtaaaaagtttttagattagggactattcttacaaactataatatt 20403240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 35414646 - 35414570
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagt 172  Q
    |||||||| || ||||| || ||||| ||||||||  ||||| ||||||||||||||||  ||| || |||||||||    
T  35414646 tttagtccatataaatttttgattcatttttagtctatatttacattttatagggactatgttgaaggactaaaagt 35414570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 12597067 - 12596936
Alignment:
Q  98 tagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaa 197  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||  ||| |||||||||||||||||||| |    
T  12597067 tagtccctacaaattttttattcacgtttagtccctatttgcattttatagggactattttggaggactaaatatatccattttttgtaaaatgttttca 12596968  T
Q  198 aaatagagattattcttacaaactacaatatt 229  Q
    ||||||||| || | |||||||||||||||||    
T  12596967 aaatagagactaattttacaaactacaatatt 12596936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 10467436 - 10467570
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 194  Q
    |||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| | || |||||||||||| ||||    
T  10467436 tttagtccttacaaaaaatttattcatttttagtccctatttgcattttatagggactattttggaggactaaaagtgtccatttttttgtaaaaagttt 10467535  T
Q  195 taaaaatagagattattcttacaaactacaatatt 229  Q
    | ||||||| || |||||||||||  |||||||||    
T  10467536 tcaaaatagggactattcttacaagttacaatatt 10467570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 32797130 - 32797017
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 213  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||| || ||||||||  ||||||||||||| ||||| ||||||  || ||||||    
T  32797130 tttattcacttttagtccctaattgcattttataaggactattttggaggaccaaaagtatctattttttgtaaaaagtttttaaaatatggactattct 32797031  T
Q  214 tacaaactacaata 227  Q
    ||||||||||||||    
T  32797030 tacaaactacaata 32797017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 39344781 - 39344665
Alignment:
Q  113 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattc 212  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||| | || ||||| ||||| ||||| ||||||   | |||||    
T  39344781 atttattcacttttagtccctatttacattttatagagactattttggaggactaaaagtgtccaatttttttaaaaggttttcaaaatatgaactattc 39344682  T
Q  213 ttacaaactacaatatt 229  Q
    |||||||||||||||||    
T  39344681 ttacaaactacaatatt 39344665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 26938819 - 26938941
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||| | |||||| |  |||| |||||    
T  26938819 tttagtccctacaaaaaatttattcacttttagtccctatttgcattttaaagggactattttgaaggactaaaagtgtccattttat-aaaaaagtttt 26938917  T
Q  196 aaaaatagagattattcttacaaa 219  Q
     ||||||| || ||||||||||||    
T  26938918 caaaatagggactattcttacaaa 26938941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 33038408 - 33038297
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttac 216  Q
    |||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||| ||||||| ||||| |||||||  | |||||||||    
T  33038408 attcgcttttagtccctatttgaattttatagggactatcttg-agaactaaaagtatccattttctgtaaaaagtttttaaaataggaactattcttac 33038310  T
Q  217 aaactacaatatt 229  Q
    ||||| |||||||    
T  33038309 aaactgcaatatt 33038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 17219673 - 17219790
Alignment:
Q  113 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattatt 211  Q
    |||||||||||||||||||||||||||| | || |||||||| ||||||| ||||||| ||| || ||||||||| || ||||| ||||||| || ||||    
T  17219673 atttattcacttttagtccctatttgcactgtaaagggactattttggaggactaaaaatatccatttttttgtataaagttttcaaaatagggactatt 17219772  T
Q  212 cttacaaactacaatatt 229  Q
     |||||||||| ||||||    
T  17219773 tttacaaactaaaatatt 17219790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 17153735 - 17153669
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 183  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||| ||||||||    
T  17153735 attcacttttagtccctatttgcattttagagggactatcttggaggactaaaagtatccatttttt 17153669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 8026231 - 8026105
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaa-atgttt 194  Q
    ||||||||||| |||  ||||||||||||||| ||  |||||||||||||||||||||  ||||||| ||||||||| |  |||||| |||||  | |||    
T  8026231 tttagtccctataaaaaatttattcacttttactctttatttgcattttatagggact--tttggagtactaaaagtgtcaatttttcgtaaattttttt 8026134  T
Q  195 taaaaatagagattattcttacaaactac 223  Q
    | ||||||| || ||||||||||||||||    
T  8026133 ttaaaatagggactattcttacaaactac 8026105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 42023957 - 42024032
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 189  Q
    |||||||| ||||||||||||||||| ||||||| |||||| ||||||| ||||||||| | ||| ||||||||||    
T  42023957 tttattcatttttagtccctatttgctttttatatggactattttggaggactaaaagtgtacatattttgtaaaa 42024032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 33695318 - 33695214
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 213  Q
    |||||||| ||||| ||  |||||  ||||||||| ||||| ||||||| | ||||| |||||| |||||||||||| |||| |||||| ||| ||||||    
T  33695318 tttattcatttttaatctttatttatattttatagagactattttggaggaataaaaatattcagtttttgtaaaatcttttcaaaataaagactattct 33695219  T
Q  214 tacaa 218  Q
    |||||    
T  33695218 tacaa 33695214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 16483963 - 16483876
Alignment:
Q  116 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 203  Q
    |||||||||||||| ||||||||||||||| || ||||| ||||||  ||||||| ||| || ||||||| ||| ||||| |||||||    
T  16483963 tattcacttttagttcctatttgcattttacagagactattttggatgactaaaaatatccaatttttgttaaaagttttcaaaatag 16483876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 17156948 - 17157014
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 183  Q
    ||||||| ||||||||||||||||||||| ||||| ||  |||||| ||||||||||| ||||||||    
T  17156948 attcactcttagtccctatttgcattttaaagggattatcttggaggactaaaagtatccatttttt 17157014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 24916031 - 24916119
Alignment:
Q  135 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 224  Q
    ||||||||||||||| |||| ||||||| ||||||| ||| |||||||| ||||| ||||  ||||||| || |||| ||||||||||||    
T  24916031 tttgcattttataggaactattttggaggactaaaaatatccattttttctaaaaagtttccaaaatag-gactatttttacaaactaca 24916119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 35054983 - 35055057
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcatttt-atagggactagtttggagaactaaaa 170  Q
    |||||| ||||||||  ||||||||| ||||||||| || ||||||||| |||||||||| |||||||||||||||    
T  35054983 tttagttcctacaaaa-atttattcatttttagtccttaattgcatttttatagggactattttggagaactaaaa 35055057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 17143179 - 17143142
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggacta 154  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  17143179 attcacttttagtccctatttgcattttagagggacta 17143142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 24292165 - 24292257
Alignment:
Q  127 agtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaac 220  Q
    |||||||||||| |||||| |||||||| ||| ||| ||||||||||| |||||||| |||||   ||| ||||||| || | |||||||||||    
T  24292165 agtccctatttgtattttacagggacta-ttttgaggactaaaagtatccattttttataaaaatcttttaaaatagggactgttcttacaaac 24292257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 16089900 - 16089767
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||| |||||    
T  16089900 tttagtccttacaaattttttattcacttttagtccatatttgcattttatagggactattttagaggactaaaagtacccattttttgtaaaaagtttt 16089801  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
    ||||| ||||| ||||||||||||||| ||||||    
T  16089800 aaaaacagagactattcttacaaactataatatt 16089767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 15070134 - 15070000
Alignment:
Q  96 tttagtccctacaaatta-tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 194  Q
    |||||||||||||||  | |||||||||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||| |||||||||||||| ||||    
T  15070134 tttagtccctacaaaaaaatttattcacttttagtccctatttacattttatagagactattttgaaggactaaaaatatccattttttgtaaaaagttt 15070035  T
Q  195 taaaaatagagattattcttacaaactacaatatt 229  Q
    | ||||| |||| |||| |||||||||||||||||    
T  15070034 tcaaaatcgagactattattacaaactacaatatt 15070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 19343767 - 19343634
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||| |||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||  ||||||||||||| |||||    
T  19343767 tttaggccctgcaaaaaatttattcacttttagtccctatttgcattttataaggactagtttggaggactaaaattatctattttttgtaaaaagtttt 19343668  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||||   | |||| |||||||||||||||||    
T  19343667 taaaatatgaactatttttacaaactacaatatt 19343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 36235969 - 36235836
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||| ||||||| | ||||| |||||||||||| ||||| |||||    
T  36235969 tttagtccctacaaattttttattcatttttagtccttatttgcattttataaggactattttggaggaataaaaatattcattttttataaaaagtttt 36235870  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||| | || | ||||||||||||| ||||||    
T  36235869 taaaatggggactgttcttacaaactaaaatatt 36235836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 5459091 - 5459223
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||  |||     
T  5459091 tttagtccctacaatttttttattcatttttaatccctatttgcattttatagggactattttggaggaataaaagtattcattttttgtagaaaattta 5459190  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
    |||||||| ||  ||||||| |||||| ||||||    
T  5459191 aaaaataggga-cattcttataaactataatatt 5459223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 1298911 - 1298817
Alignment:
Q  94 aatttagtccctacaaatta--tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 189  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||| ||| |||   ||||||||||||||||||||||||    
T  1298911 aatttagtccctacaaaaaaaatttattcacttttagtccctatttgcattttatagggactattttagag---taaaagtattcattttttgtaaaa 1298817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 26724327 - 26724196
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 194  Q
    ||||| ||||| |||  |||||||||||||||||| |||||| ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| ||||    
T  26724327 tttagcccctataaaaaatttattcacttttagtctctattttcattttataaggactattttggaggactaaaagtatccatttttttgtaaaaagttt 26724228  T
Q  195 taaaaatagagattattcttacaaactacaat 226  Q
    | ||||||| || | |||||| ||| ||||||    
T  26724227 tcaaaatagggactgttcttataaattacaat 26724196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 38948719 - 38948632
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaata 202  Q
    |||||||||||| ||||||||||| ||||||||||||||| || || | ||||||||| | |||||||||||||| ||||| ||||||    
T  38948719 ttattcacttttggtccctatttgaattttatagggactatttgggtggactaaaagtgtccattttttgtaaaaagtttttaaaata 38948632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 6502345 - 6502283
Alignment:
Q  133 tatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| || ||||||||||| |||||    
T  6502345 tatttacattttatagggactattttggaggactaaaagtatccaatttttgtaaaaagtttt 6502283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 35270806 - 35270758
Alignment:
Q  177 attttttgtaaaatgttttaaaaatagagattattcttacaaactacaa 225  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  35270806 attttttgttaaaagttttcaaaatagagattattcttacaaactacaa 35270758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 38607494 - 38607378
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattc 212  Q
    |||||| |||||||||||| ||||||||||||||| ||||| |||| |  ||||||| |||  ||||||| |||| | ||||| ||||||  || |||||    
T  38607494 tttatttacttttagtcccgatttgcattttatagagactattttgaaagactaaaaatatatattttttggtaacaagttttcaaaataaggactattc 38607395  T
Q  213 ttacaaactacaatatt 229  Q
    | | |||||||||||||    
T  38607394 taaaaaactacaatatt 38607378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 30403539 - 30403647
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatag-ggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 213  Q
    |||||||||||||||   ||||| ||| |||||  |||||| ||||||| |||||| ||   |||||||||||||| ||||| ||||||  || ||||||    
T  30403539 ttattcacttttagtttatatttacatgttataaaggactattttggagtactaaatgtgcccattttttgtaaaaagtttttaaaataatgactattct 30403638  T
Q  214 tacaaacta 222  Q
    |||||||||    
T  30403639 tacaaacta 30403647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 14820414 - 14820501
Alignment:
Q  142 tttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    |||||| |||||| |||| || |||||||||   |||||||| ||||| ||||| ||||||  ||||||| |||||||||||| ||||    
T  14820414 tttataaggactattttgaaggactaaaagtgaccattttttataaaaagtttttaaaatatggattatttttacaaactacattatt 14820501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 26188812 - 26188843
Alignment:
Q  197 aaaatagagattattcttacaaactacaatat 228  Q
    ||||||||||||||||||||||||||||||||    
T  26188812 aaaatagagattattcttacaaactacaatat 26188843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 34005654 - 34005709
Alignment:
Q  133 tatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaa 188  Q
    |||||||||||||||||||||| |||  || ||||||| ||| |||||||||||||    
T  34005654 tatttgcattttatagggactattttaaaggactaaaaatatacattttttgtaaa 34005709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 34784121 - 34784027
Alignment:
Q  134 atttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    ||||| |||||||||| |||| |||| || |||||||||||| |||||||  |||| ||||| |||||| ||| |||||| | ||| |||||||||    
T  34784121 atttgtattttataggaactattttgaaggactaaaagtatt-attttttagaaaaagttttcaaaataaagaatattctaataaattacaatatt 34784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 39058478 - 39058540
Alignment:
Q  164 actaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaat 226  Q
    ||||||||| | |||| ||||||||| ||||| ||||||  || |||||||||||||||||||    
T  39058478 actaaaagtgtccattgtttgtaaaaagttttcaaaataaggactattcttacaaactacaat 39058540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 39057143 - 39057200
Alignment:
Q  104 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 161  Q
    |||||||  ||||||||||||||| ||| ||||| |||||||| ||||||| ||||||    
T  39057143 ctacaaaaaatttattcacttttaatccttatttacattttattgggactattttgga 39057200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 5159469 - 5159561
Alignment:
Q  135 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaata 227  Q
    ||||||||||||||  | || ||||||| |||| |||||| |||||||||| ||| ||||| ||||||  || |||| ||| |||||| ||||    
T  5159469 tttgcattttatagatattattttggaggactacaagtatccattttttgttaaaagtttttaaaataaggactatttttagaaactataata 5159561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 44446805 - 44446938
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||| |||||    
T  44446805 tttagttcttacaaaatttttattcacttttagtccctatttgcattttatagggactattttggaggactaaaagtacacattttttgtaaaaagtttt 44446904  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     |||| ||||| ||||||||||||||| ||||||    
T  44446905 caaaacagagactattcttacaaactataatatt 44446938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 28769459 - 28769592
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||||||||||| |||||| ||||||| | |||||||||  ||||| ||||||| |||||    
T  28769459 tttaatccctataaaaaatttattcacttttagtccttatttgcattttataaggactattttggaggattaaaagtatcaattttctgtaaaaagtttt 28769558  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     |||||| ||| ||||||||||||||||||||||    
T  28769559 taaaataaagactattcttacaaactacaatatt 28769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 50334584 - 50334679
Alignment:
Q  94 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 189  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||    
T  50334584 aatttagtccctacaaaaaatttattcacttttagttcctatttgcattttatagggactattttagaggactaaaaatatccattttttgtaaaa 50334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 34359546 - 34359413
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||||   |||||||||||||| | ||||||| |||||||||||||||  |||| || ||||||| ||| |||||||||||||| |||||    
T  34359546 tttagtccctacaaaaattttattcacttttaattcctatttacattttatagggacttttttgaaggactaaaattatccattttttgtaaaaagtttt 34359447  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     |||| || ||  ||| |||||||||| ||||||    
T  34359446 caaaacagggaccatttttacaaactataatatt 34359413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 20315101 - 20314970
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||||| ||| |||  ||||||||||||||||||||||||| |||||||||||||| | ||||||| |||  ||| ||  |||||||||||||  ||||    
T  20315101 tttagtctctataaaaaatttattcacttttagtccctatttacattttatagggacaattttggagtact--aagcataaattttttgtaaaaaatttt 20315004  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     |||||||||| |||| ||||||| | |||||||    
T  20315003 caaaatagagactattattacaaaattcaatatt 20314970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 38673254 - 38673370
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtat-tcattttttgtaaaatgttttaaaaatagagattattc 212  Q
    ||||||||||||||||| ||| ||  ||||||| ||||||| ||||||| ||||||||||| |  |||||||||||| |||||| ||| ||  | |||||    
T  38673254 tttattcacttttagtctctacttatattttatggggactattttggaggactaaaagtatctatttttttgtaaaaggttttacaaacagtaaatattc 38673353  T
Q  213 ttacaaactacaatatt 229  Q
    ||||||| |||||||||    
T  38673354 ttacaaattacaatatt 38673370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 44648235 - 44648123
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 214  Q
    |||||||||||||||| ||||||| | ||||||||||||| ||| ||| |||||||||||  |  |||||||||| ||||| ||||||  |  ||| |||    
T  44648235 ttattcacttttagtctctatttgaactttatagggactatttttgaggactaaaagtatcaa--ttttgtaaaaagttttcaaaataaggtctatactt 44648138  T
Q  215 acaaactacaatatt 229  Q
    |||||||||||||||    
T  44648137 acaaactacaatatt 44648123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 52423210 - 52423102
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaact-aaaagtattcattttttgtaaaatgttt 194  Q
    |||| |||||| |||  ||||||| |||||||| ||||||||||||||||||||| |||  |||||| ||| |||||||| |||||||  ||||| ||||    
T  52423210 tttaatccctataaaaaatttatttacttttagcccctatttgcattttataggggctatattggaggactaaaaagtatccatttttaataaaaagttt 52423111  T
Q  195 taaaaatag 203  Q
    | |||||||    
T  52423110 tcaaaatag 52423102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 39340965 - 39340853
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 214  Q
    ||||||||||||| |  |||||| |||||||||  ||||| ||||||| ||||||||||  ||||||||||||||   ||  ||||||| || |||| ||    
T  39340965 ttattcacttttactttctattttcattttataatgactattttggaggactaaaagtacacattttttgtaaaaaaatt--aaaatagggactattttt 39340868  T
Q  215 acaaactacaatatt 229  Q
    |||||||||||||||    
T  39340867 acaaactacaatatt 39340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 17269020 - 17268915
Alignment:
Q  123 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttg-taaaatgttttaaaaatagagattattcttacaaact 221  Q
    ||||| || |||||| ||||||||| ||| || |||  |||| ||||||||||||||||||  ||||||||||  |||||| ||| |||| |||||||||    
T  17269020 ttttaatctctattttcattttatatggattattttttagaattaaaagtattcatttttttataaaatgtttataaaatatagactatttttacaaact 17268921  T
Q  222 acaata 227  Q
    ||||||    
T  17268920 acaata 17268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 41544534 - 41544605
Alignment:
Q  112 tatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 183  Q
    |||||||||||||||||||||||| ||||||||| ||| |||| ||||||  | ||||||| | ||||||||    
T  41544534 tatttattcacttttagtccctatatgcattttacaggaactattttggaagattaaaagtgtccatttttt 41544605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 45743891 - 45743817
Alignment:
Q  150 gactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactaca 224  Q
    ||||| ||||||| || |||||| | |||||||||||||| ||||| ||||||| ||  ||||||||||||||||    
T  45743891 gactattttggaggacaaaaagtgtccattttttgtaaaaagtttttaaaatagggaccattcttacaaactaca 45743817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 2382870 - 2382915
Alignment:
Q  166 taaaagtattcattttttgtaaaatgttttaaaaatagagattatt 211  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||    
T  2382870 taaaagtattcattttttgtaaaaagttttcaaaatagagaatatt 2382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 20336992 - 20336927
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttgga 161  Q
    ||||| ||||| |||  ||||||||||||||||| |||||||  ||||||||||||| | ||||||    
T  20336992 tttagcccctataaaaaatttattcacttttagttcctatttatattttatagggacaattttgga 20336927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 16876518 - 16876466
Alignment:
Q  177 attttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    |||||||||||  | |||| ||||||| || ||||||||||||||||||||||    
T  16876518 attttttgtaatttttttttaaaatagggactattcttacaaactacaatatt 16876466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 17957246 - 17957112
Alignment:
Q  95 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 194  Q
    ||||||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||||    
T  17957246 atttagtccttataaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 17957147  T
Q  195 taaaaatagagattattcttacaaactacaatatt 229  Q
    | |||| ||||| ||||||||||||||| ||||||    
T  17957146 tcaaaacagagactattcttacaaactataatatt 17957112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 17157991 - 17158114
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||||  | ||||||||||||||||||||||||||| |||||| ||||| ||| ||| |||| |||||| |||||||||||||| |||||    
T  17157991 tttagtccctacaaaaaaattattcacttttagtccctatttgcatcttatagagactacttttgaggactacaagtatccattttttgtaaaaagtttt 17158090  T
Q  196 aaaaatagagattattcttacaaa 219  Q
     |||||||||||||||||||||||    
T  17158091 caaaatagagattattcttacaaa 17158114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 6198025 - 6197898
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||| ||   ||||||||||||| |||| ||||| |||||||||||||||| ||||||| | ||||||| | |||||||| ||||| |||||    
T  6198025 tttagtccctacgaaaagtttattcacttttggtccttatttacattttatagggactattttggaggaataaaagtgtccattttttctaaaaagtttt 6197926  T
Q  196 aaaaatagagattattcttacaaactac 223  Q
     |||||||||| ||||||||||||||||    
T  6197925 caaaatagagactattcttacaaactac 6197898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 10313495 - 10313395
Alignment:
Q  123 ttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaacta 222  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||||||| |  ||||| | | |||| |||| || |||| || |||||||||||||||    
T  10313495 ttttagtccttatttgcattttatagggactattttggaggactaaaagtgtatattttcttttaaatattttcaatatagggactattcttacaaacta 10313396  T
Q  223 c 223  Q
    |    
T  10313395 c 10313395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 4254508 - 4254623
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 213  Q
    |||||| ||||||| ||| ||||| ||||||| | |||||| |||||||   ||||||| | |||||||||||||  ||||| ||||||| ||||||| |    
T  4254508 tttatttacttttaatccttattttcattttacaaggactattttggagggttaaaagtgtccattttttgtaaacagtttttaaaatagggattatttt 4254607  T
Q  214 tacaaactacaatatt 229  Q
    ||||||||||| ||||    
T  4254608 tacaaactacagtatt 4254623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 24672483 - 24672352
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||||   |||||||||| || |||||||||||||| ||| | |||||| ||||||| ||||||| |||   |||||| | ||  |||||    
T  24672483 tttagtccctacaaaaattttattcactattggtccctatttgcatcttaaatggactattttggaggactaaaaatatctttttttttttaa--gtttt 24672386  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     |||||||||| |||| ||||||| |||||||||    
T  24672385 taaaatagagactattattacaaattacaatatt 24672352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 4408948 - 4409058
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||| ||| |||||| | |||||||||||||||| ||||||| |||||||||||||||| |||||| ||||          ||||||||||||| |||||    
T  4408948 tttaatccttacaaaatttttattcacttttagttcctatttacattttatagggactattttggaaaact----------attttttgtaaaaagtttt 4409037  T
Q  196 aaaaatagagattattcttac 216  Q
     |||||||||| |||||||||    
T  4409038 caaaatagagactattcttac 4409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 34187205 - 34187125
Alignment:
Q  149 ggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    |||||| |||| || || ||||||||||||||||| ||| | ||||| |||||||||| ||||||||| ||||||||||||    
T  34187205 ggactattttgaaggaccaaaagtattcattttttttaacaagttttcaaaatagagactattcttacgaactacaatatt 34187125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 30465127 - 30465243
Alignment:
Q  113 atttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattc 212  Q
    ||||||||||| |||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  |||| ||||||| || |||||    
T  30465127 atttattcactcttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttttaaaatagggactattc 30465226  T
Q  213 ttacaaactacaatatt 229  Q
    ||||||||| |||||||    
T  30465227 ttacaaacttcaatatt 30465243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 12611994 - 12611904
Alignment:
Q  109 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaa 200  Q
    |||| |||||||||||||||| | ||||| |||||||||| ||||| ||||| | || |||| |||| ||||||||||||| | ||||||||    
T  12611994 aattttttattcacttttagttc-tattttcattttatagtgactattttggtggacaaaaaatattaattttttgtaaaaagatttaaaaa 12611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 10516584 - 10516655
Alignment:
Q  157 ttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    |||||| ||||||||||| ||| |||||||||| ||| | ||| ||| || ||||||||||||||||||||||    
T  10516584 ttggaggactaaaagtatccatattttgtaaaaagttattaaa-tagggactattcttacaaactacaatatt 10516655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 5644646 - 5644753
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||||| ||| |||  ||||||||||| |||||||||| || ||| ||||||  |||| ||||||| ||||||| |||   |||||||| ||| |||||    
T  5644646 tttagtctctataaaacatttattcactcttagtccctacttacatcttatagacactattttggaggactaaaattataatttttttgtcaaaagtttt 5644745  T
Q  196 aaaaatag 203  Q
     |||||||    
T  5644746 taaaatag 5644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 2538695 - 2538638
Alignment:
Q  171 gtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    |||||||||||||||||| | |||||||| ||| ||| |||||||||||||| ||||||    
T  2538695 gtattcattttttgtaaatttttttaaaa-tagggatcattcttacaaactataatatt 2538638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 12339008 - 12338950
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 154  Q
    ||||||| ||||||||| |||||||||||||||||  | |||| ||||||||| |||||    
T  12339008 tttagtcgctacaaattttttattcacttttagtctttgtttgtattttatagagacta 12338950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 20132270 - 20132136
Alignment:
Q  95 atttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttt 194  Q
    ||||||| | |||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||||    
T  20132270 atttagttcttacaaattttttattcatttttagtccctatttgtattttatagggactattttggaggactaaaggtatccattttttgtaaaaagttt 20132171  T
Q  195 taaaaatagagattattcttacaaactacaatatt 229  Q
    | |||| ||||| |||||||||||| || ||||||    
T  20132170 tcaaaacagagactattcttacaaattataatatt 20132136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 28098727 - 28098618
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgt-aaaatgttttaaaaatagagattattct 213  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||| ||||| ||||||  |||||||      
T  28098727 ttatttacttttagtccctatttgcattttatagggactattttggaggactaaaaatattcattttttgtaaaaaagttttcaaaatatggattatttc 28098628  T
Q  214 tacaaactac 223  Q
    ||||||||||    
T  28098627 tacaaactac 28098618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 13009317 - 13009451
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttt 194  Q
    |||||||||||||||   |||||||||  ||| || |||||| ||||||| |||||||| ||||||| |||||||||||||| |||||||||||| |||     
T  13009317 tttagtccctacaaaagttttattcacaattaatctctatttacattttacagggactaatttggaggactaaaagtattcacttttttgtaaaaagtta 13009416  T
Q  195 taaaaatagagattattcttacaaactacaatatt 229  Q
    | ||||||  || ||||||||||||||||||||||    
T  13009417 ttaaaataacgactattcttacaaactacaatatt 13009451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 11297951 - 11297840
Alignment:
Q  119 tcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt-gtaaaatgttttaaaaatagagattattcttaca 217  Q
    |||||||| ||||||||||| |||||| |||||||| ||||||| ||||||||||| |||||||| ||| || ||||| ||||||| || |||| |||||    
T  11297951 tcactttttgtccctatttgtattttaaagggactattttggaggactaaaagtatccattttttagtataaagttttcaaaatagggactatttttaca 11297852  T
Q  218 aactacaatatt 229  Q
    ||||| ||||||    
T  11297851 aactaaaatatt 11297840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 34471421 - 34471348
Alignment:
Q  116 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaa 189  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| || |||||| |||| ||||||||||||||    
T  34471421 tattcacttttagtccctatttgcattttatagagactattttgaaggactaaaggtatacattttttgtaaaa 34471348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 27567617 - 27567752
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtat--tcattttttgtaaaatgtt 193  Q
    ||||||||||| |||   ||| |||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||| |||  |  ||||||| |||| |||    
T  27567617 tttagtccctaaaaaagttttcttcacttttaatccatatttgcattttataaggactattttggaggactaaaaatatactttttttttgcaaaaagtt 27567716  T
Q  194 ttaaaaatagagattattcttacaaactacaatatt 229  Q
    || ||||||  || ||||||||||||||||||||||    
T  27567717 ttcaaaataaggactattcttacaaactacaatatt 27567752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 48696532 - 48696447
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 203  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||| | |||| ||||| ||||| |||||||    
T  48696532 attcacttttagtccctatttgcattttatagagactattttggaggactaaaaatattc-tgttttctaaaaagtttttaaaatag 48696447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 30851589 - 30851722
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    ||||||| ||| |||  |||||||||||||||||||||| || ||| ||||||  |||| ||| ||| ||||||| |||   |||||||| |||  ||||    
T  30851589 tttagtctctataaaacatttattcacttttagtccctacttacatcttatagacactattttcgaggactaaaattataatttttttgtcaaaattttt 30851688  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||||| || |||||||||||||| |||||||    
T  30851689 taaaatagggactattcttacaaacttcaatatt 30851722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 33992019 - 33991899
Alignment:
Q  108 aaattatttattcacttttagtccctatttgcattttatagggactagtttggagaa-ctaaaagtattcattttttgtaaaatgttttaaaaatagaga 206  Q
    ||||| ||||||||| ||||||||||||||| |||||||| ||| || |||||||||   |||| ||||||||||||||||||    || |||||| |||    
T  33992019 aaattttttattcacgtttagtccctatttgtattttataaggaatattttggagaataaaaaaatattcattttttgtaaaaaaaattcaaaatataga 33991920  T
Q  207 ttattcttacaaactacaata 227  Q
      ||||||| |||||||||||    
T  33991919 ccattcttaaaaactacaata 33991899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 39596738 - 39596786
Alignment:
Q  141 ttttatagggactagtttggagaactaaaagtattcattttttgtaaaa 189  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  39596738 ttttatagagactattttggagaactaaaagtattcattttttgtaaaa 39596786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 22485125 - 22485182
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 154  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||    
T  22485125 tttagtccgtacaaatt-tttatttacttttagtccctatttgcattttataaggacta 22485182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 25067828 - 25067734
Alignment:
Q  135 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactacaatatt 229  Q
    |||||||||| ||| ||||| ||||||  ||||||||||| |||||||||||||  ||||| ||||||  || |||| |||||||||| ||||||    
T  25067828 tttgcattttctagagactattttggaagactaaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatatt 25067734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 25411518 - 25411631
Alignment:
Q  116 tattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctta 215  Q
    ||||| ||||||||| || |||  |||||||||| |||| ||| ||||| ||||| ||| |||||||   |||| || || ||||||  || ||||||||    
T  25411518 tattctcttttagtcactgtttatattttataggaactattttagagaattaaaaatatccatttttgtaaaaaagtatttaaaatattgactattctta 25411617  T
Q  216 caaactacaatatt 229  Q
    ||||||||||||||    
T  25411618 caaactacaatatt 25411631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 12925389 - 12925313
Alignment:
Q  135 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattatt 211  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||  ||||||||||||| ||||||||||||  |||||||    
T  12925389 tttgctttttataaggattattttggaggactaaaaatatctattttttgtaaaaagttttaaaaataaggattatt 12925313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 33752913 - 33753046
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||| ||||||||| || |||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||| |   |||    
T  33752913 tttaatccctacaatttttttattcacttttagtccttatttacattttatagggactattttggagaagtaaaagtgttcattttttgtaataaagttt 33753012  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||||| ||  |||||||||||||||||||||    
T  33753013 caaaatagtgaccattcttacaaactacaatatt 33753046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 20986141 - 20986010
Alignment:
Q  100 gtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaa 197  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||  |  |||||||||||| ||||| |    
T  20986141 gtccctacaaaaaatttatttacttttagtccttatttgcattttatagggactattttggaggactaaaagtatctattttttttgtaaaaagttttca 20986042  T
Q  198 aaatagagattattcttacaaactacaatatt 229  Q
    |||||| || ||||||| ||||||||||||||    
T  20986041 aaatagggactattcttgcaaactacaatatt 20986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 29307555 - 29307642
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 183  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||  ||| ||||||||    
T  29307555 tttagtccctacaaattttttattaactcttagtccctatttgcattttatagggactattttggaggactaaatatatccatttttt 29307642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 13393006 - 13392892
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgt-aaaatgttttaaaaatagagattattctt 214  Q
    ||||||||||||||||||| || |||||||| | |||| ||||||||||||||| ||| || |||||||| |||| ||||| ||||||| || |||| ||    
T  13393006 attcacttttagtccctatatgtattttatatgaactattttggagaactaaaattatccatttttttgtaaaaaagtttttaaaatagggactattttt 13392907  T
Q  215 acaaactacaatatt 229  Q
    |||||||||||||||    
T  13392906 acaaactacaatatt 13392892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 16545363 - 16545495
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||  ||||||  ||||||||||||||| | || ||||||||||| || |||||| ||||||| ||||||| ||| ||||||||||| || |||||    
T  16545363 tttagtctgtacaaaaaatttattcacttttactaccaatttgcattttgtaaggactattttggaggactaaaaatatccattttttgtataaagtttt 16545462  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     ||||||| ||  ||| ||| |||||||||||||    
T  16545463 caaaatagggaccattttta-aaactacaatatt 16545495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 37470903 - 37470983
Alignment:
Q  140 attttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaac 220  Q
    ||||||||| ||||| ||||||| |||||||| || |||||||||||||| |||||  ||||||  | |||||||||||||    
T  37470903 attttatagagactattttggaggactaaaagcatccattttttgtaaaaagtttttcaaataggaactattcttacaaac 37470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 29103057 - 29102970
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 183  Q
    |||| ||| ||||||  ||||||||||||||||||| ||||||| ||||||||  |||| ||||||| ||||||| |||  |||||||    
T  29103057 tttaatccatacaaaaaatttattcacttttagtccttatttgctttttatagatactattttggaggactaaaaatatctatttttt 29102970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 23230836 - 23230894
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggacta 154  Q
    ||||||||||||||| | ||||||||||||||||| |||| | ||||||||| ||||||    
T  23230836 tttagtccctacaaaatttttattcacttttagtcactatatacattttataaggacta 23230894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 35218215 - 35218150
Alignment:
Q  97 ttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggag 162  Q
    ||||| |||||||| | |||||| ||||||||||  ||||| |||||||||||||||| |||||||    
T  35218215 ttagttcctacaaaatttttatttacttttagtctttatttacattttatagggactattttggag 35218150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 35954440 - 35954306
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattc-attttttgtaaaatgttt 194  Q
    |||||||||||||| || ||||||||||||||||||||| ||  ||||||||||| ||| ||||||| ||||||||| ||| ||||||  ||||| | ||    
T  35954440 tttagtccctacaatttttttattcacttttagtccctagttatattttataggggctattttggaggactaaaagttttcaatttttattaaaaagatt 35954341  T
Q  195 taaaaatagagattattcttacaaactacaatatt 229  Q
    | | |||||||| ||||||||||||||||||||||    
T  35954340 ttataatagagactattcttacaaactacaatatt 35954306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 34904198 - 34904093
Alignment:
Q  124 tttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactac 223  Q
    |||||||||||||||||||||| | |||||| |||  || ||||||||||| |||| ||||||||| ||||| ||||||| |||||||||||||||||||    
T  34904198 tttagtccctatttgcattttaaaaggactattttataggactaaaagtatccattctttgtaaaaagttttcaaaatagggattattcttacaaactac 34904099  T
Q  224 aatatt 229  Q
    ||||||    
T  34904098 aatatt 34904093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 8794770 - 8794655
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 213  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||  ||||||| | | |||||||||||||| ||||| ||||||| || ||||||    
T  8794770 tttattcacttttagtccctatttgcattttataggagctattttggatgactaaaaatgtccattttttgtaaaaagtttttaaaatagggactattct 8794671  T
Q  214 tacaaactacaatatt 229  Q
    ||| || |||||||||    
T  8794670 tacgaattacaatatt 8794655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 10077808 - 10077686
Alignment:
Q  109 aattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaaaaatagaga 206  Q
    |||| |||||||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||| ||| ||  |||||||||||| ||||| ||||||| ||    
T  10077808 aattttttattcacttttagtccatatttgtattttattgggactattttggaggactaaaaatatccattttttttgtaaaaagttttcaaaataggga 10077709  T
Q  207 ttattcttacaaactacaatatt 229  Q
     |||| |||||||||||||||||    
T  10077708 ctattattacaaactacaatatt 10077686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 39293064 - 39293196
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtttt 195  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||||||| |||||| ||||||| | ||||| ||| ||||||||  ||||||||||    
T  39293064 tttagtccctacaaaaaaattattcacttttagtccctattttcattttatatggactattttggaggaataaaaatatccatttttt-aaaaatgtttt 39293162  T
Q  196 aaaaatagagattattcttacaaactacaatatt 229  Q
     |||||||  | |||| ||||||| |||||||||    
T  39293163 taaaataggaactattattacaaattacaatatt 39293196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 30640995 - 30641111
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattc 212  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||| || ||||||||| || ||||| ||||||| || || |     
T  30640995 tttattcacttttagtccctatttgcattttaaagggactattttggaggaccaaaagtatccatttttttgtataaagttttcaaaatagggactactt 30641094  T
Q  213 ttacaaactacaatatt 229  Q
    |||||||||| ||||||    
T  30641095 ttacaaactaaaatatt 30641111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 6191285 - 6191172
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattctt 214  Q
    ||||||||||||||| | |||||| |||||||||  |||| ||||||||||||||  |||||||||||||||||| ||||| ||||||  || |||||||    
T  6191285 ttattcacttttagttcttatttgtattttataga-actattttggagaactaaacatattcattttttgtaaaaagttttcaaaatacggactattctt 6191187  T
Q  215 acaaactacaatatt 229  Q
    ||||| |||||||||    
T  6191186 acaaagtacaatatt 6191172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 24490520 - 24490638
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgt----aaaatgttttaaaaatagagattat 210  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||||||| |    ||||     | ||||||| ||||||    
T  24490520 ttattcacttttagtccctatttgcattttatagagactattttagaggactaaaagtatccattttttattaaaaaaaaaaaatcaaaatagggattat 24490619  T
Q  211 tcttacaaactacaatatt 229  Q
    |||||||||||||||||||    
T  24490620 tcttacaaactacaatatt 24490638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 31994684 - 31994809
Alignment:
Q  104 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 203  Q
    |||||||  ||||||||| ||||| |||| ||||||||||||||||||||| ||||||| | || |||| | ||||||||  |||| ||||| ||||| |    
T  31994684 ctacaaaaaatttattcatttttaatcccaatttgcattttatagggactattttggaggattacaagtgtccattttttaaaaaaagttttcaaaattg 31994783  T
Q  204 agattattcttacaaactacaatatt 229  Q
     || |||||||||||| |||||||||    
T  31994784 ggactattcttacaaattacaatatt 31994809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 855752 - 855648
Alignment:
Q  129 tccctatttgcattttatagggactagtttgg-----agaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaactac 223  Q
    |||||||||||||||||||||||||| |||||     || ||||||| |||||||||||||||||| ||||| ||||||  || ||||| ||||||||||    
T  855752 tccctatttgcattttatagggactattttggtctggaggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactac 855653  T
Q  224 aatat 228  Q
    |||||    
T  855652 aatat 855648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 29242513 - 29242646
Alignment:
Q  96 tttagtccctacaaattatttattcacttttagtccctatttgcattttatagggac---tagtttggagaactaaaagtattcattttttgtaaaatgt 192  Q
    |||||||| ||||||  | |||||||||||||| |||||||||||||||||||||||   || | ||| | |||||||||||  ||||||||||||| |     
T  29242513 tttagtccttacaaaaaaattattcacttttagcccctatttgcattttatagggactattattgtgggggactaaaagtatcgattttttgtaaaaag- 29242611  T
Q  193 tttaaaaatagagattattcttacaaactacaatat 228  Q
      | ||||||| || ||||||||||||||| |||||    
T  29242612 -gtcaaaatagggactattcttacaaactataatat 29242646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 27694475 - 27694574
Alignment:
Q  104 ctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatag 203  Q
    |||||||  ||||||||||||||| ||||||||  ||||||||||||| || || | || ||||||| |||  ||||||||||||| ||||| |||||||    
T  27694475 ctacaaaaaatttattcacttttaatccctattcacattttatagggattatttagaaggactaaaattatctattttttgtaaaaagtttttaaaatag 27694574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 434511 - 434598
Alignment:
Q  134 atttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattcttacaaact 221  Q
    |||||||||||||||| |||| ||||||| || |||| ||| ||||||||  |||| ||||| |||| |  || ||||||||||||||    
T  434511 atttgcattttataggaactattttggaggacgaaaaatatccattttttagaaaaagttttgaaaagatggactattcttacaaact 434598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 16894 - 16999
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 213  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |||| ||||||| |||||| ||||| ||||||| || ||||||    
T  16894 tttattcacttttagtccctatttgtattttatagggactattttagaggactaaaggtatacatttttagtaaaacgttttcaaaatagggactattct 16993  T
Q  214 tacaaa 219  Q
    ||||||    
T  16994 tacaaa 16999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 152141 - 152256
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattattct 213  Q
    |||| ||||||||||||| |||||||||||||||| ||||| |||| |  ||||||| ||||||||||||| || | ||||||||||||| || ||||||    
T  152141 tttactcacttttagtccttatttgcattttatagagactattttgaaagactaaaaatattcattttttgcaagaagttttaaaaatagggactattct 152240  T
Q  214 tacaaactacaatatt 229  Q
    ||||| ||||||||||    
T  152241 tacaatctacaatatt 152256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 253697 - 253831
Alignment:
Q  94 aatttagtccctacaaattatttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgtt 193  Q
    ||||||||| |||||||  | ||||||| ||||| || |||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||||||   |    
T  253697 aatttagtctctacaaaaaaattattcatttttaatctctatctgcattttatagggactattttggaggattaaaagtatccattttttgtaaaaaagt 253796  T
Q  194 ttaaaaatagagattattcttacaaactacaatatt 229  Q
    || |||||||||| ||| ||||||||||| ||||||    
T  253797 tt-aaaatagagactatccttacaaactataatatt 253831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 3418 - 3352
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 183  Q
    ||||||||||||||||||||||| ||||| |||||| | ||||||| ||||||||||| ||||||||    
T  3418 attcacttttagtccctatttgcgttttagagggacaattttggaggactaaaagtatccatttttt 3352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 48396 - 48509
Alignment:
Q  115 ttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca--ttttttgtaaaatgttttaaaaatagagattattc 212  Q
    |||| |||||||||||| ||||| |||||||||| ||||| ||||||  ||||||||||| ||  |||||||||||| ||||| |||| || || | |||    
T  48396 ttatccacttttagtccatattttcattttatagagactattttggatgactaaaagtatccattttttttgtaaaaagttttcaaaagagggactgttc 48495  T
Q  213 ttacaaactacaat 226  Q
    ||| ||||||||||    
T  48496 ttataaactacaat 48509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 179 - 113
Alignment:
Q  117 attcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattcatttttt 183  Q
    |||||||||||||| |||||| ||||||| ||||||||  |||||| ||||||||||| ||||||||    
T  179 attcacttttagtctctatttacattttagagggactatcttggaggactaaaagtatccatttttt 113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 5440 - 5551
Alignment:
Q  114 tttattcacttttagtccctatttgcattttatagggactagtttggagaactaaaagtattca-ttttttgtaaaatgttttaaaaatagagattattc 212  Q
    |||||||| ||||||||||||||||||||||  |||||||| |||||||     ||||||| || ||||||||| || ||||| ||||||| || || |     
T  5440 tttattcatttttagtccctatttgcattttcaagggactattttggag-----aaagtatccatttttttgtataaagttttcaaaatagggactactt 5534  T
Q  213 ttacaaactacaatatt 229  Q
    |||||||||| ||||||    
T  5535 ttacaaactaaaatatt 5551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 7458 - 7495
Alignment:
Q  108 aaattatttattcacttttagtccctatttgcatttta 145  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  7458 aaattttttattcatttttagtccctatttgcatttta 7495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 363064 - 363140
Alignment:
Q  135 tttgcattttatagggactagtttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagattatt 211  Q
    ||||| ||||||| ||| || ||||||| ||||||| |||  ||||||||||||| ||| ||||||||  |||||||    
T  363064 tttgctttttataaggattactttggaggactaaaaatatctattttttgtaaaaagttctaaaaataaggattatt 363140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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