View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_317 (Length: 239)
Name: NF9913A_low_317
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_317 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 1045539 - 1045396
Alignment:
| Q |
30 |
aacctaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaa |
129 |
Q |
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| T |
1045539 |
aaccgaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaa |
1045440 |
T |
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| Q |
130 |
ttaatattttattgattgtaaataatgtaacaattttatagagt |
173 |
Q |
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| T |
1045439 |
ttaatattttattgattgtaaataatgtaacaattttatagagt |
1045396 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 18569081 - 18569039
Alignment:
| Q |
171 |
agtgaaattaaataggtggattctagggtgaaggttctattaa |
213 |
Q |
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| T |
18569081 |
agtgtaattatataggtggattctagggtgaaggtcctattaa |
18569039 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 24848475 - 24848438
Alignment:
| Q |
184 |
aggtggattctagggtgaaggttctattaagtgcctca |
221 |
Q |
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| T |
24848475 |
aggtggattctagggtgagggttctattaagtccctca |
24848438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 24847783 - 24847819
Alignment:
| Q |
185 |
ggtggattctagggtgaaggttctattaagtgcctca |
221 |
Q |
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| T |
24847783 |
ggtggattctagggtgagggttctattaagtccctca |
24847819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 4402335 - 4402299
Alignment:
| Q |
185 |
ggtggattctagggtgaaggttctattaagtgcctca |
221 |
Q |
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| T |
4402335 |
ggtggattctagggtgagggttctattaagtccctca |
4402299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 4707004 - 4706968
Alignment:
| Q |
185 |
ggtggattctagggtgaaggttctattaagtgcctca |
221 |
Q |
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| T |
4707004 |
ggtggattctagggtgagggttctattaagtccctca |
4706968 |
T |
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