View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_32 (Length: 434)
Name: NF9913A_low_32
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_32 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 39 - 421
Target Start/End: Original strand, 9804675 - 9805056
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
9804675 |
tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga |
9804774 |
T |
|
| Q |
139 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804775 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
9804874 |
T |
|
| Q |
239 |
tcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatcttgatcattttgcatgtctttctcta |
338 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |
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| T |
9804875 |
tcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatat-tttttttatctagatcattttgcatgtctttctcaa |
9804973 |
T |
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| Q |
339 |
atttgtggttgtcttttatgtgagtggtttcaaacctcatactatgtaataaatacatggattttattttaatttattatcca |
421 |
Q |
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| T |
9804974 |
atttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatcca |
9805056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 215 - 419
Target Start/End: Original strand, 9817777 - 9817979
Alignment:
| Q |
215 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt |
314 |
Q |
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| T |
9817777 |
tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaactttttccacat--ttttttatcta |
9817874 |
T |
|
| Q |
315 |
gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacctcatactatgtaataaatacatggattttattttaattta |
414 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
9817875 |
gatcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaattta |
9817974 |
T |
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| Q |
415 |
ttatc |
419 |
Q |
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||||| |
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| T |
9817975 |
ttatc |
9817979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||| |
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| T |
9817550 |
tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc |
9817649 |
T |
|
| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa |
154 |
Q |
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||||||||| || ||| |||||||||||||||||||||||||| |
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| T |
9817650 |
tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa |
9817693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
| Q |
18 |
gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc |
117 |
Q |
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|||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
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| T |
9817438 |
gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc |
9817537 |
T |
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| Q |
118 |
tagcaccatcactgagatcgacatcgatcagaaaaaagaa |
157 |
Q |
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| T |
9817538 |
taccaccataggtgagatcgacatcaatcaaacaaaagaa |
9817577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||| |
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| T |
9817341 |
tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga |
9817439 |
T |
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| Q |
139 |
catcgatca |
147 |
Q |
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||||||||| |
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| T |
9817440 |
catcgatca |
9817448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 9806792 - 9806742
Alignment:
| Q |
366 |
tttcaaacctcatactatgtaataaatacatggattttattttaatttatt |
416 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9806792 |
tttcaaacatcatactatgtaataaatacatggattttattttattttatt |
9806742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 218 - 418
Target Start/End: Original strand, 11788 - 11987
Alignment:
| Q |
218 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaactttttt-catatannnnnnnatcttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| || || |||| | |
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| T |
11788 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttttcacat--tgttttatctata |
11885 |
T |
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| Q |
317 |
tcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacctcatactatgtaataaatacatggattttattttaatttatt |
416 |
Q |
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| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
11886 |
taattttgcatgtctttatctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtaataaatacatgaattttattttattttatt |
11985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 11558 - 11708
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
| |
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|||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || ||||| ||| | |||||| |
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| T |
11558 |
tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc |
11657 |
T |
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| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat |
161 |
Q |
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|||||| || ||||||| |||||||| |||||||| |||||||||||||| |
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| T |
11658 |
tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat |
11708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 11467 - 11585
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| || | ||| | ||||||||||| || || ||||||||||||| ||| ||| | | |||||||||| |
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| T |
11467 |
tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga |
11566 |
T |
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| Q |
139 |
catcgatcagaaaaaagaa |
157 |
Q |
| |
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||| ||||| | ||||||| |
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| T |
11567 |
cattgatcaaacaaaagaa |
11585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 215 - 369
Target Start/End: Complemental strand, 42778900 - 42778749
Alignment:
| Q |
215 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt |
314 |
Q |
| |
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|||||||||||||||| |||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||||| || |||| |
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| T |
42778900 |
tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttcacat--ttctttatcta |
42778804 |
T |
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| Q |
315 |
gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttc |
369 |
Q |
| |
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|||||||||||| | |||||| | ||||||||||| ||||||| ||||||||||| |
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| T |
42778803 |
gatcattttgcacgcctttctttgatttgtggttgccttttatatgagtggtttc |
42778749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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