View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_320 (Length: 239)
Name: NF9913A_low_320
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_320 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 41777386 - 41777562
Alignment:
| Q |
50 |
agtttcaacttgtttgtggccattgtcttcatgatgtagcacctaatctcttcagccattgtaagaataggatgagctctaaacttcaagatcttagcat |
149 |
Q |
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| T |
41777386 |
agtttcaacttgtttgtggccattgtcttcatgatgtagcacctaatctcttcagccattgtaagaataggatgagctctaaacttcaagatcttagcat |
41777485 |
T |
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| Q |
150 |
taaacacttcacatgtgttgtttgttatgttgtcaactttgggccattcactaaagtgagattttgtccatgatgtc |
226 |
Q |
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| T |
41777486 |
taaacacttcacatgtgttgtttgttatgttgtcaactttgggccattcactaaagtgagattttgtccatgatgtc |
41777562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 1831724 - 1831761
Alignment:
| Q |
21 |
agaagaaatatgctacaaatattttaaagagtttcaac |
58 |
Q |
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| T |
1831724 |
agaagaaatatgctacaaatattttaaagagattcaac |
1831761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 35301497 - 35301321
Alignment:
| Q |
50 |
agtttcaacttgtttgtggccattgtcttcatgatgtagcacctaatctcttcagccattgtaagaataggatgagctctaaacttcaagatcttagcat |
149 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35301497 |
agtttcaacttgtttgtggtcattgtcttcatgatgtagcacctaatctcttcagccattgtaagaatatgatgagctctaaacttcaagatcttagcat |
35301398 |
T |
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| Q |
150 |
taaacacttcacatgtgttgtttgttatgttgtcaactttgggccattcactaaagtgagattttgtccatgatgtc |
226 |
Q |
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| T |
35301397 |
taaacacttcacatgtgttgtttgttatgttgtcaactttgggccattcactaaagtgagattttgtccatgatgtc |
35301321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 18935517 - 18935693
Alignment:
| Q |
50 |
agtttcaacttgtttgtggccattgtcttcatgatgtagcacctaatctcttcagccattgtaagaataggatgagctctaaacttcaagatcttagcat |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18935517 |
agtttcaacttgtttgtggccattgtcttcatgatgtagcaactaatctcttaagccattgtaagaataggatgagctctaaacttcaagatcttagcat |
18935616 |
T |
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| Q |
150 |
taaacacttcacatgtgttgtttgttatgttgtcaactttgggccattcactaaagtgagattttgtccatgatgtc |
226 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18935617 |
taaacactttacatgtgttgtttgttatgttgtcaactttgggccattcactaaagtgagattttctccatgatgtc |
18935693 |
T |
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