View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_321 (Length: 239)
Name: NF9913A_low_321
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_321 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 22679046 - 22679189
Alignment:
| Q |
77 |
attcactaagctcttattgattatgataaatctacgcagagagggctttatgtcggtgtcatctagtacacattataccttaaccaaagaagatgttggt |
176 |
Q |
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| T |
22679046 |
attcactaagctcttattgattatgataaatctacgcagagagggctttatgtcggtgtcatctggtacacattataccttaaccaaagaagatgttggt |
22679145 |
T |
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| Q |
177 |
tgttgtttgactttttcatacacaccaattaattctgaaggtat |
220 |
Q |
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| T |
22679146 |
tgttgtttgactttttcatacacaccaattaattctgaaggtat |
22679189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 22680410 - 22680482
Alignment:
| Q |
148 |
attataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgaaggtat |
220 |
Q |
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| T |
22680410 |
attataccttgaccgaagaagatgttggttgttgtttgacttttgcatacacaccaattaattctgaaggtat |
22680482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 21227321 - 21227251
Alignment:
| Q |
150 |
tataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgaaggtat |
220 |
Q |
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| T |
21227321 |
tataccttgaccaaagaagatgttggttgttgtttgacttttgtatacataccaattaattttgaaggtat |
21227251 |
T |
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