View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_325 (Length: 238)
Name: NF9913A_low_325
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_325 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 220134 - 219917
Alignment:
| Q |
21 |
ctaactcattcactatcataattgacgatttggaacatcgtcaatttttataattctacaaccataattgagattatataaaccacgattaattgcaatt |
120 |
Q |
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| T |
220134 |
ctaactcattcactatcataattgacgatttggaacatcgtcaatttttataattctacaaccataattgagattatataaaccacgattaattgcaatt |
220035 |
T |
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| Q |
121 |
ctttgcgaatgcgactatatccgcgattgtgattaattgtgtttataatttgttacctcgagaaatttggctccagcttcaagctcccgctttttggaag |
220 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
220034 |
cttcgcgaatgcgactatatctgcgattgtgattaattgtgtttataatttgttacctcgagaaatttggctccagcttcaagctcccactctttggaag |
219935 |
T |
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| Q |
221 |
aacagttcccacggccgg |
238 |
Q |
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|||| |||||||| |||| |
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| T |
219934 |
aacatttcccacgaccgg |
219917 |
T |
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