View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_326 (Length: 237)
Name: NF9913A_low_326
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_326 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (13 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 4231810 - 4232030
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4231810 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
4231909 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4231910 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacgcttgttcatctcagcagct |
4232009 |
T |
|
| Q |
217 |
tctttctcaaacctctcaatc |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4232010 |
tctttctcaaacctctcaatc |
4232030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 3301073 - 3301293
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3301073 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
3301172 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301173 |
ccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
3301272 |
T |
|
| Q |
217 |
tctttctcaaacctctcaatc |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3301273 |
tctttctcaaacctctcaatc |
3301293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 43066617 - 43066398
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43066617 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43066518 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43066517 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43066418 |
T |
|
| Q |
217 |
tctttctcaaacctctcaat |
236 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43066417 |
tctttctcaaacctctcaat |
43066398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 43045337 - 43045556
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43045337 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43045436 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43045437 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43045536 |
T |
|
| Q |
217 |
tctttctcaaacctctcaat |
236 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43045537 |
tctttctcaaacctctcaat |
43045556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 43045790 - 43046009
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43045790 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43045889 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43045890 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43045989 |
T |
|
| Q |
217 |
tctttctcaaacctctcaat |
236 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43045990 |
tctttctcaaacctctcaat |
43046009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 43084218 - 43084434
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43084218 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43084317 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43084318 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43084417 |
T |
|
| Q |
217 |
tctttctcaaacctctc |
233 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43084418 |
tctttctcaaacctctc |
43084434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 45983654 - 45983435
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||| ||||||||||| || || || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
45983654 |
cacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaactt |
45983555 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
| |||| | |||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45983554 |
cgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcttgttcatcttagcagct |
45983455 |
T |
|
| Q |
217 |
tctttctcaaacctctcaat |
236 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
45983454 |
tctttctcaagactctcaat |
45983435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 7890966 - 7890776
Alignment:
| Q |
37 |
ccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattg |
136 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | | || || ||||||||||||||||||| ||||||||||| |
|
|
| T |
7890966 |
ccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggttgtctcaaacttccacagagaaatgtcaattg |
7890867 |
T |
|
| Q |
137 |
tgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaa |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7890866 |
tgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaatgcctgttcatctcagcagcttctttctcaaa |
7890776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 45993434 - 45993225
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||||||||||||||| || || || ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
45993434 |
cacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaactt |
45993335 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
| ||| || | |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45993334 |
cgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacgcttgatcatctcagcagct |
45993235 |
T |
|
| Q |
217 |
tctttctcaa |
226 |
Q |
| |
|
|||||||||| |
|
|
| T |
45993234 |
tctttctcaa |
45993225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 38137802 - 38137583
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
38137802 |
cacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactt |
38137703 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||| ||||||| |||| |
|
|
| T |
38137702 |
tgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagct |
38137603 |
T |
|
| Q |
217 |
tctttctcaaacctctcaat |
236 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
38137602 |
tctttctcaagtctctcaat |
38137583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 43 - 226
Target Start/End: Complemental strand, 7888695 - 7888512
Alignment:
| Q |
43 |
atcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatac |
142 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||| | || |||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
7888695 |
atcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatac |
7888596 |
T |
|
| Q |
143 |
ctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaa |
226 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
7888595 |
ctctttcacgctcagccttgagtttgtcaagcacccaagcatacttgaataaacgtctgtttatctcagcagcttctttctcaa |
7888512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 51291985 - 51292177
Alignment:
| Q |
43 |
atcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatac |
142 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||||| |||||| |||||||| | || |||||||| | |||| ||||||||||||||||| |
|
|
| T |
51291985 |
atcatgttcttaatgaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatac |
51292083 |
T |
|
| Q |
143 |
ctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
51292084 |
ctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctcagtagcttctttctcaagtctctcaat |
51292177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 40034612 - 40034423
Alignment:
| Q |
45 |
catgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatacct |
144 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||| ||||||| |||||||| ||| || || ||||||||||| ||| | ||| |||||||| | |||| |
|
|
| T |
40034612 |
catgttcttgatgaaatc--tgtgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaaacttggacatggaaatatcaattgtaacacct |
40034515 |
T |
|
| Q |
145 |
ctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40034514 |
ctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttcatctcagcagcttctttctcaaatttctcaat |
40034423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 43076730 - 43076512
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||| | ||||||| ||| ||||||||||| |||| ||| ||| || ||||||||||| |
|
|
| T |
43076730 |
cacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgttgtctcaaactt |
43076631 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||| |||| ||| ||||| || |||||||||||||| |||||| ||||||||||||| | ||| |||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
43076630 |
ccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtcaaggatccaggcatacttgactgaagtcttacccatttcagcagct |
43076532 |
T |
|
| Q |
217 |
tctttctcaaacctctcaat |
236 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
43076531 |
tctatctcaaacttctcaat |
43076512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 4620033 - 4620252
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||| |||||||||||||| || || |||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
4620033 |
cacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctcaaactt |
4620132 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||| |||||||| ||| |
|
|
| T |
4620133 |
ggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggct |
4620232 |
T |
|
| Q |
217 |
tctttctcaaacctctcaat |
236 |
Q |
| |
|
||||||||||| | |||||| |
|
|
| T |
4620233 |
tctttctcaaatcgctcaat |
4620252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 1846735 - 1846951
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||| ||||||| ||||| || || ||||||||||||||||||||||||||||| ||||||||||||| ||||||| | | || || ||||||||||| |
|
|
| T |
1846735 |
cacagtcagcttcggatgctccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaactt |
1846834 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
1846835 |
ccatagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgcctgtttatctcagcagct |
1846934 |
T |
|
| Q |
217 |
tctttctcaaacctctc |
233 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
1846935 |
tctttctcaaatctctc |
1846951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 4787426 - 4787233
Alignment:
| Q |
43 |
atcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatac |
142 |
Q |
| |
|
||||||||| ||||| | ||||||||||| || ||||||||||||||||||| |||||| | ||||||||||| ||| || ||||||||||||| || |
|
|
| T |
4787426 |
atcatgttcctaatgtattccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcac |
4787327 |
T |
|
| Q |
143 |
ctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat |
236 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||||||||||||||||| || ||| |||| |||||||||||||| |||||||| |
|
|
| T |
4787326 |
ctctttcacgctcacccttgagtttgtcaagcacccaagcatacttgaatgaaggccagttagcctcataagcttctttctcaagtctctcaat |
4787233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 236
Target Start/End: Original strand, 4297843 - 4298035
Alignment:
| Q |
44 |
tcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatacc |
143 |
Q |
| |
|
|||||||||||||| | ||||| ||||| ||||||||||||||| |||||| |||||| | ||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
4297843 |
tcatgttcttaatgcattccctatgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaaacttggacagagaaatgtcaattgtggcacc |
4297942 |
T |
|
| Q |
144 |
tctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaat |
236 |
Q |
| |
|
||||||| | ||||| ||||| |||||||| ||||||||||||||||| ||| || |||| | |||| || || ||||||||| |||||||| |
|
|
| T |
4297943 |
tctttcatggtcagctttgagtttgtcaagtacccaagcatacttgaacgaaggcatgttaacctcaacatctactttctcaagtctctcaat |
4298035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 34691170 - 34691373
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||| ||||||||||| || || || ||||||||||||||||||||||||||||| || |||||||||| |||| || ||||||| || ||||||||||| |
|
|
| T |
34691170 |
cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt |
34691269 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34691270 |
gcataga--aatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagct |
34691367 |
T |
|
| Q |
217 |
tctttc |
222 |
Q |
| |
|
|||||| |
|
|
| T |
34691368 |
tctttc |
34691373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 34713582 - 34713785
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||| ||||||||||| || || || ||||||||||||||||||||||||||||| || |||||||||| |||| || ||||||| || ||||||||||| |
|
|
| T |
34713582 |
cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt |
34713681 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34713682 |
gcataga--aatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagct |
34713779 |
T |
|
| Q |
217 |
tctttc |
222 |
Q |
| |
|
|||||| |
|
|
| T |
34713780 |
tctttc |
34713785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 16232552 - 16232722
Alignment:
| Q |
52 |
ttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatacctctttcac |
151 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||||||| || ||||||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
16232552 |
ttaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcac |
16232651 |
T |
|
| Q |
152 |
gctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttc |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
16232652 |
gctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttcatctcagcagcttctttc |
16232722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 33861181 - 33861391
Alignment:
| Q |
19 |
caatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaacttcc |
118 |
Q |
| |
|
|||||||| | |||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| | |||||||| || | |
|
|
| T |
33861181 |
caatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccaggggcatcaatgacagtgtaccggtactggtttgtctcaaaattac |
33861280 |
T |
|
| Q |
119 |
acagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaaccca---agcatacttgaatgaacgcttgttcatctcagcagc |
215 |
Q |
| |
|
|| || || |||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
33861281 |
gcatagaaacgtcaatggagatacctctttcacgctcagcctcgagcttgtcaagaacccaattagcatacttgaatgaacacttgtcgatctgagcagc |
33861380 |
T |
|
| Q |
216 |
ttctttctcaa |
226 |
Q |
| |
|
||||| ||||| |
|
|
| T |
33861381 |
ttcttcctcaa |
33861391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 16349482 - 16349691
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| || |||||||| || |
|
|
| T |
16349482 |
cacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaatt |
16349581 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
| ||| || | |||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||| |||||| | |||||||||| |
|
|
| T |
16349582 |
caacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaaagaatccttgtttaactcagcagct |
16349681 |
T |
|
| Q |
217 |
tctttctcaa |
226 |
Q |
| |
|
| ||||||| |
|
|
| T |
16349682 |
ttattctcaa |
16349691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 7529032 - 7528816
Alignment:
| Q |
17 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
116 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||| |||||||| | ||||| || ||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
7529032 |
cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaattt |
7528933 |
T |
|
| Q |
117 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgcttgttcatctcagcagct |
216 |
Q |
| |
|
||||| ||||| || || || || |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528932 |
ccacaaggcaatatcgatggtaattcctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcatctcagcagct |
7528833 |
T |
|
| Q |
217 |
tctttctcaaacctctc |
233 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
7528832 |
tccttctcaaatctctc |
7528816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7519677 - 7519445
Alignment:
| Q |
1 |
tcaatgagatggacatcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtact |
100 |
Q |
| |
|
||||||| | ||||| |||||||||| ||||| || ||||||||||||||||| |||||||| | ||||| || ||||||||||| ||||||||||||| |
|
|
| T |
7519677 |
tcaatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtact |
7519578 |
T |
|
| Q |
101 |
tagtggtctcaaacttccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttgaatgaacgctt |
200 |
Q |
| |
|
| ||||||||||| ||||||| |||||| ||||| || || |||||||||||||||||||| ||||||||||||||||| || |||||||| || | ||| |
|
|
| T |
7519577 |
tggtggtctcaaatttccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaaagacctctt |
7519478 |
T |
|
| Q |
201 |
gttcatctcagcagcttctttctcaaacctctc |
233 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| |
|
|
| T |
7519477 |
gttcatctcagcagcttccttctcgaatctctc |
7519445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 39242237 - 39242152
Alignment:
| Q |
57 |
gaaatccctgtgtccaggggcatca---atgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtga |
139 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
39242237 |
gaaatccctgtctccagaggcatcatcaatgacagtgcagtagtactttgttgtctcaaacttggacagagcaatgtcaattgtga |
39242152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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