View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_33 (Length: 434)
Name: NF9913A_low_33
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 179 - 357
Target Start/End: Complemental strand, 4119818 - 4119639
Alignment:
| Q |
179 |
cagttaacatatctcagact-caaggaaactgaattctctgaccaccgtatcggaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaacgc |
277 |
Q |
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| T |
4119818 |
cagttgacatatctcaggcttcaaggaaactgaattccctgaccactgtatcagaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaatgc |
4119719 |
T |
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| Q |
278 |
cttttcctcgttcgcctgtgatgtttcatatatatctcttgataagaattaattcaataaaaaa--tatatgaagttttatt |
357 |
Q |
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| T |
4119718 |
cttttcctcgttcgcctgtgatgtttcat--atatctcttgataagaactaattcaataaaaaatgtatatgaagttttatt |
4119639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 4119408 - 4119341
Alignment:
| Q |
356 |
ttctagactatgatgatcagtatgttcccaattcatcatatctcatgaaacgtcaccacaaagttcat |
423 |
Q |
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| T |
4119408 |
ttctagactatgatgatcagcatgttcccaattcatcatatctcctgaaacgtcaccacaaagttcat |
4119341 |
T |
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