View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_331 (Length: 236)
Name: NF9913A_low_331
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_331 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 18022590 - 18022749
Alignment:
| Q |
76 |
tgaagatatttccatcaagtaaatatgcaagtcgtaacaaagcgcacaagcagccttatgtacattttatatgcaacaaaacaaactaatcattatgcac |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18022590 |
tgaagatatttccatcaagtaaatatgcaagtcgtaacaaagcgcacatgcagccttatgtacattttatatgcaacaaaacaaactgatcattatgcac |
18022689 |
T |
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| Q |
176 |
atgaaggttggtaaactcttcttacctctcgctctcgcttcctcttttctttcattttga |
235 |
Q |
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| T |
18022690 |
aagaaggttggtaaacacttcttacctctcgctctcgcttcctcttttccttcattttga |
18022749 |
T |
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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 19672392 - 19672550
Alignment:
| Q |
77 |
gaagatatttccatcaagtaaatatgcaagtcgtaacaaagcgcacaagcagccttatgtacattttatatgcaacaaaacaaactaatcattatgcaca |
176 |
Q |
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| T |
19672392 |
gaagatatttccattaaataagcatgcaagtcgtaacaaagaatacaagcaaccttatgtacattttatatgtaacaaaacaaactgatccatatgcata |
19672491 |
T |
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| Q |
177 |
tgaaggttggtaaactcttcttacctctcgctctcgcttcctcttttctttcattttga |
235 |
Q |
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| T |
19672492 |
acaagattgggaaatacttcttacctctcgctcccgcttcctcttttccttcattttga |
19672550 |
T |
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 3275275 - 3275206
Alignment:
| Q |
9 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactga |
78 |
Q |
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| T |
3275275 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactga |
3275206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 3279851 - 3279783
Alignment:
| Q |
9 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3279851 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
3279783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 28601477 - 28601545
Alignment:
| Q |
9 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
77 |
Q |
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| T |
28601477 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
28601545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 28596899 - 28596966
Alignment:
| Q |
9 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaact |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596899 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaact |
28596966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 24395249 - 24395291
Alignment:
| Q |
36 |
atatatcaatcagagaaaaaatattcttctgaaatcaaactga |
78 |
Q |
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| T |
24395249 |
atatatcaatcagagaaaaaatattcttctcaaatcaaactga |
24395291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 297997 - 297931
Alignment:
| Q |
9 |
ataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaa-tattcttctgaaatcaaact |
76 |
Q |
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||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
297997 |
ataatccttgtacatgttcaatgaaaaatat--caatcagagaaaaaaatattcttctcaaatcaaact |
297931 |
T |
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