View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9913A_low_334 (Length: 236)
Name: NF9913A_low_334
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_334 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 17454995 - 17455222
Alignment:
| Q |
10 |
tggacatcaacattgtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttaatttttcatttctatatgtacttatgc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
17454995 |
tggacatcaacattgtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttattttttcatttctatatgtacttttgc |
17455094 |
T |
|
| Q |
110 |
atgcattaccaaatga-nnnnnnnnnnnaggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattca |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17455095 |
atgcattaccaaatgatttattttttttaggggacattggaagcagctctgcaggttcaaaccttgaagacgatgaaattgatgctgaaatgtacattca |
17455194 |
T |
|
| Q |
209 |
accgggaaatccacacttcgttgcaaaa |
236 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
17455195 |
accgggaaatccacacttcattgcaaaa |
17455222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 17393749 - 17393650
Alignment:
| Q |
137 |
aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcgttgcaaaa |
236 |
Q |
| |
|
|||| ||||||| |||||||||||| | ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |
|
|
| T |
17393749 |
agggaacattgggagcagctctgcacgatcaaaacttgaagatgacgaaattgatgctgaaatatatattcaaccgggaaatcctcactttattgcaaaa |
17393650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 17461363 - 17461456
Alignment:
| Q |
143 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcgttgcaaaa |
236 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||| ||||||| |
|
|
| T |
17461363 |
cattggaagtagctctgcagctccaaatcttgaagatgatgaaattgatgctgaaatgtatattcagccaggaaatccatacttctatgcaaaa |
17461456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 40235230 - 40235153
Alignment:
| Q |
143 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatcc |
220 |
Q |
| |
|
||||||||||||||||||| | |||| | |||||||||||||||||||| ||||||||| ||||| || |||||||| |
|
|
| T |
40235230 |
cattggaagcagctctgcagctccaaaacatgaagatgatgaaattgatgttgaaatgtatattcagccaggaaatcc |
40235153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 40235375 - 40235321
Alignment:
| Q |
13 |
acatcaacattgtagaacctgcaaagcatgtaag-ttttgacatcataccgaaga |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
40235375 |
acatcaacattgtagaacctgcaaagcatgtatgtttttgacatcatactgaaga |
40235321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University