View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_335 (Length: 235)
Name: NF9913A_low_335
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_335 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 47778561 - 47778763
Alignment:
| Q |
19 |
acatcaccaccttttggaacaggtttaattttcttaaacttgatccaaaaacaacctaaacaaagaaccaatctatctatactctgaataagaaagagca |
118 |
Q |
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| T |
47778561 |
acatcaccaccttttggaacaggtttaattttcttaaacttgatccaaaaacaacctaaacaaagaaccaatctatctatactctgaataagaaagagca |
47778660 |
T |
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| Q |
119 |
caatacaagcatttgtgagaaattgcaaaggaggagcaagatacccaacacgaatcaaaacccacctagcataaaaccaatcaaaaacatctctaacacc |
218 |
Q |
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| T |
47778661 |
caatacaagcatttgtgagaaattgcaaaggaggagcaagatacccaacacgaattaaaacccatctagcataaaaccaatcaaaaacatctctaacacc |
47778760 |
T |
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| Q |
219 |
aaa |
221 |
Q |
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| T |
47778761 |
aaa |
47778763 |
T |
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