View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9913A_low_342 (Length: 234)

Name: NF9913A_low_342
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9913A_low_342
NF9913A_low_342
[»] chr6 (8 HSPs)
chr6 (65-216)||(31045599-31045750)
chr6 (1-63)||(17181945-17182007)
chr6 (12-62)||(5739784-5739834)
chr6 (1-63)||(20822877-20822939)
chr6 (1-63)||(23632646-23632708)
chr6 (1-63)||(32046698-32046760)
chr6 (1-63)||(34442072-34442134)
chr6 (14-59)||(19713128-19713173)
[»] chr7 (18 HSPs)
chr7 (1-63)||(41018663-41018725)
chr7 (1-64)||(43159584-43159647)
chr7 (1-63)||(27704435-27704496)
chr7 (1-63)||(12007195-12007257)
chr7 (1-63)||(13152593-13152654)
chr7 (17-63)||(31289390-31289436)
chr7 (1-63)||(32777716-32777778)
chr7 (1-63)||(40231715-40231776)
chr7 (1-63)||(41893915-41893977)
chr7 (1-63)||(44184568-44184630)
chr7 (1-63)||(47448826-47448888)
chr7 (3-60)||(2300082-2300139)
chr7 (10-63)||(21103012-21103065)
chr7 (18-63)||(22638910-22638955)
chr7 (17-57)||(7077648-7077687)
chr7 (12-60)||(22836196-22836244)
chr7 (14-54)||(25272725-25272765)
chr7 (12-60)||(33057382-33057430)
[»] chr8 (15 HSPs)
chr8 (1-63)||(13106477-13106539)
chr8 (1-63)||(33100478-33100540)
chr8 (1-62)||(40528749-40528810)
chr8 (1-63)||(12284279-12284341)
chr8 (1-63)||(20473779-20473840)
chr8 (1-63)||(23754716-23754778)
chr8 (1-63)||(25830255-25830317)
chr8 (1-63)||(26026896-26026958)
chr8 (14-59)||(18550113-18550158)
chr8 (14-59)||(42651054-42651099)
chr8 (3-63)||(67172-67232)
chr8 (12-64)||(10644822-10644874)
chr8 (1-65)||(18651368-18651432)
chr8 (12-60)||(20284839-20284887)
chr8 (12-60)||(21071468-21071516)
[»] chr1 (20 HSPs)
chr1 (1-63)||(34008180-34008242)
chr1 (1-63)||(1689391-1689453)
chr1 (1-63)||(32915081-32915143)
chr1 (1-63)||(33076119-33076181)
chr1 (1-63)||(47214208-47214270)
chr1 (1-63)||(649768-649830)
chr1 (1-63)||(9566970-9567032)
chr1 (1-63)||(10890055-10890117)
chr1 (1-63)||(13489662-13489724)
chr1 (1-63)||(15705071-15705133)
chr1 (1-63)||(48983677-48983739)
chr1 (1-63)||(51286376-51286438)
chr1 (1-63)||(52362482-52362544)
chr1 (1-63)||(52714910-52714972)
chr1 (2-63)||(8905728-8905788)
chr1 (2-63)||(11947795-11947856)
chr1 (14-59)||(50875566-50875611)
chr1 (14-54)||(1100351-1100391)
chr1 (15-59)||(32966402-32966446)
chr1 (17-61)||(33466066-33466110)
[»] chr5 (16 HSPs)
chr5 (1-63)||(24468295-24468357)
chr5 (1-63)||(4088443-4088505)
chr5 (1-63)||(6517712-6517774)
chr5 (1-63)||(13089791-13089853)
chr5 (1-63)||(14011317-14011379)
chr5 (1-63)||(18695318-18695380)
chr5 (1-63)||(22098255-22098317)
chr5 (1-63)||(31708370-31708431)
chr5 (1-63)||(32872907-32872969)
chr5 (1-63)||(38293368-38293430)
chr5 (1-63)||(40364568-40364630)
chr5 (1-63)||(41175715-41175777)
chr5 (1-62)||(10649436-10649497)
chr5 (14-59)||(17574116-17574161)
chr5 (1-62)||(31329136-31329196)
chr5 (18-63)||(43214085-43214130)
[»] chr4 (16 HSPs)
chr4 (1-63)||(42815404-42815466)
chr4 (1-60)||(42916653-42916712)
chr4 (1-63)||(2256339-2256401)
chr4 (27-65)||(7654215-7654253)
chr4 (1-63)||(10250525-10250586)
chr4 (1-63)||(12241058-12241119)
chr4 (25-63)||(20118781-20118819)
chr4 (1-63)||(30170029-30170091)
chr4 (1-63)||(33820346-33820407)
chr4 (37-75)||(46212958-46212996)
chr4 (1-63)||(50890083-50890144)
chr4 (1-63)||(51255746-51255808)
chr4 (1-63)||(51734642-51734704)
chr4 (1-63)||(56557733-56557795)
chr4 (2-63)||(36123470-36123531)
chr4 (23-63)||(4949265-4949305)
[»] chr3 (17 HSPs)
chr3 (1-63)||(10811135-10811197)
chr3 (1-63)||(14207267-14207329)
chr3 (1-63)||(14215015-14215077)
chr3 (1-63)||(45293038-45293100)
chr3 (1-63)||(49417575-49417637)
chr3 (15-64)||(53715450-53715499)
chr3 (17-63)||(23553614-23553660)
chr3 (1-63)||(29573365-29573427)
chr3 (1-63)||(37894252-37894314)
chr3 (1-59)||(39629848-39629906)
chr3 (1-63)||(46019462-46019524)
chr3 (1-63)||(55399999-55400061)
chr3 (14-54)||(2935408-2935448)
chr3 (1-61)||(47988495-47988554)
chr3 (1-61)||(47997782-47997841)
chr3 (1-61)||(48007069-48007128)
chr3 (14-54)||(48205179-48205219)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-63)||(10964-11026)
[»] scaffold0299 (1 HSPs)
scaffold0299 (25-63)||(18831-18869)
[»] scaffold0150 (1 HSPs)
scaffold0150 (25-63)||(30536-30574)
[»] chr2 (12 HSPs)
chr2 (1-63)||(6336252-6336314)
chr2 (1-63)||(6999077-6999139)
chr2 (17-63)||(7438568-7438614)
chr2 (1-63)||(13765400-13765462)
chr2 (1-63)||(14876957-14877019)
chr2 (1-63)||(28245728-28245790)
chr2 (1-63)||(38821366-38821428)
chr2 (1-63)||(40210077-40210139)
chr2 (1-63)||(44050015-44050077)
chr2 (2-63)||(7664079-7664140)
chr2 (2-63)||(34134781-34134842)
chr2 (25-61)||(20507620-20507656)
[»] scaffold0018 (1 HSPs)
scaffold0018 (102-143)||(171884-171925)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 31045599 - 31045750
Alignment:
Q  65 ccctatatatagtaaccatttgaaccaaaattttctgatttatatatgaatatttcgacaattcataggaattgctttaaatttgcatcggggacacata 164  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31045599 ccctatatatagtaactatttgaaccaaaattttctgatttatatatgaatatttcgacaattcataggaattgctttaaatttgcatcggggacacata 31045698  T
Q  165 gttgatagtagaatatatatgagtatctaattcttagtgtgatggcattgtt 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31045699 gttgatagtagaatatatatgagtatctaatttttagtgtgatggcattgtt 31045750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17181945 - 17182007
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| |||||| ||||| | ||||||||||| ||||| |||||| ||||||||||||||    
T  17181945 gagtatgagatagaaagttgttacaaaagttgttcaaaaatggttgtttaaatatcatttctc 17182007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 5739784 - 5739834
Alignment:
Q  12 agaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttct 62  Q
    |||| ||||||| ||||||||||  ||||||||||||||||||||| ||||    
T  5739784 agaaagttgtcacaaaagttgttaaaaaatagttgttcaaatatcaattct 5739834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20822877 - 20822939
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  20822877 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 20822939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23632646 - 23632708
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| |||||| | ||||| ||||||||||  ||| | |||||||||||||||||||||    
T  23632646 gagtatgagatagaaaggtgtcacaaaagttgtttaaaagtggttgttcaaatatcatttctc 23632708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32046760 - 32046698
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||||||||||| | ||||||||  ||||| | |||||||||||||||||||    
T  32046760 gagtatgagagagaaggttgtcacataagttgttacaaaattgatgttcaaatatcatttctc 32046698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34442072 - 34442134
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | ||||  |||||| |||||||||  ||||||||||| ||||||||||||||||    
T  34442072 gagtatgagagagaaaattgtcacaaaagttgtcataaaatagttgctcaaatatcatttctc 34442134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 19713128 - 19713173
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatt 59  Q
    |||||||||  |||||||||| ||||| ||||||||||||||||||    
T  19713128 aaggttgtcccaaaagttgttgtaaaaaagttgttcaaatatcatt 19713173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41018725 - 41018663
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| |||||| ||||||| ||||||||| | |||||||||||||||||||||||||||    
T  41018725 gagtatgagatagaaagttgtcacaaaagttgtccaaaaatagttgttcaaatatcatttctc 41018663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43159584 - 43159647
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctcg 64  Q
    |||||||| |||||| ||||||| |||| |||||  ||||| ||||||||||||||||||||||    
T  43159584 gagtatgagatagaaagttgtcacaaaaattgttaaaaaatggttgttcaaatatcatttctcg 43159647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27704496 - 27704435
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| |||||||||||| | ||||||||| | ||||||||||| |||||||||||||||    
T  27704496 gagtatgagatagaaggttgt-acaaaagttgtacaaaaatagttgtacaaatatcatttctc 27704435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12007195 - 12007257
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  12007195 gagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 12007257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13152654 - 13152593
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  13152654 gagtatgagagagaaagttgtcacaaaagttgt-caaaaatggttgttcaaatatcatttctc 13152593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 31289390 - 31289436
Alignment:
Q  17 gttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||||||| |||||| ||| | |||||||||||||||||||||    
T  31289390 gttgtcagaaaaattgttcaaaagtggttgttcaaatatcatttctc 31289436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32777716 - 32777778
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  32777716 gagtatgagagagaaagttgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctc 32777778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40231715 - 40231776
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| || ||||||||||| |||||||| || |||||| |||| |||||||||||||||    
T  40231715 gagtatgagatggaaggttgtcacaaaagttg-tcaaaaataattgtacaaatatcatttctc 40231776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41893977 - 41893915
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  41893977 gagtatgaaagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 41893915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44184568 - 44184630
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||||| |||||||||||||||||||    
T  44184568 gagtatgagagagaaagttgtcacaaaagttgtcgcaaaatagatgttcaaatatcatttctc 44184630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47448888 - 47448826
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  47448888 gagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 47448826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 2300139 - 2300082
Alignment:
Q  3 gtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcattt 60  Q
    |||||| |||||| ||||| | |||| ||||  |||||||||||||||||||||||||    
T  2300139 gtatgagatagaaagttgtaacaaaaattgtcataaaatagttgttcaaatatcattt 2300082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 21103065 - 21103012
Alignment:
Q  10 atagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||| ||||||| |||| |||||  ||||||||||||||||||| |||||||    
T  21103065 atagaaagttgtcacaaaaattgtttaaaaatagttgttcaaatataatttctc 21103012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 22638910 - 22638955
Alignment:
Q  18 ttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||| |||||||||  |||||||| |||||||||||||||||||    
T  22638910 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 22638955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 7077687 - 7077648
Alignment:
Q  17 gttgtcagaaaagttgttctaaaatagttgttcaaatatca 57  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  7077687 gttgtcacaaaagttgtt-taaaatagttgttcaaatatca 7077648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22836244 - 22836196
Alignment:
Q  12 agaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcattt 60  Q
    |||| ||||||| ||||||||||  |||| |||||||||||||||||||    
T  22836244 agaaagttgtcataaaagttgtttaaaaaaagttgttcaaatatcattt 22836196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 25272725 - 25272765
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaata 54  Q
    |||||||||| ||||||||| |||||| |||||||||||||    
T  25272725 aaggttgtcacaaaagttgtactaaaagagttgttcaaata 25272765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 33057430 - 33057382
Alignment:
Q  12 agaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcattt 60  Q
    |||| ||||| | ||||||||||  ||||||||||||||||||||||||    
T  33057430 agaaagttgttacaaaagttgttaaaaaatagttgttcaaatatcattt 33057382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13106539 - 13106477
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| |||||| ||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  13106539 gagtatgagatagaaagttgtcaaaaaagttgtccaaaaatggttgttcaaatatcatttctc 13106477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33100478 - 33100540
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||| |||||| |||||||||||||||||||||    
T  33100478 gagtatgagagagaaagttgtcacaaaagttgttataaaatggttgttcaaatatcatttctc 33100540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40528810 - 40528749
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttct 62  Q
    |||||||| | |||| ||||||| |||||||||   ||||||||||||||||||||||||||    
T  40528810 gagtatgaaagagaaagttgtcataaaagttgtcacaaaatagttgttcaaatatcatttct 40528749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12284279 - 12284341
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||| ||||| | ||||| |||||||||||||||||||||    
T  12284279 gagtatgagagagaaagttgtcacaaacgttgtccaaaaatggttgttcaaatatcatttctc 12284341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20473840 - 20473779
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||||| |||| ||||||| |||| ||||| |||||| ||||| |||||||||||||||    
T  20473840 gagtatgatagagaaagttgtcaaaaaa-ttgttataaaatggttgtacaaatatcatttctc 20473779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23754716 - 23754778
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||| ||  ||||| |||||||||||||||||||||    
T  23754716 gagtatgaaagagaaagttgtcacaaaagttattaaaaaatggttgttcaaatatcatttctc 23754778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25830255 - 25830317
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  25830255 gagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 25830317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26026958 - 26026896
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  26026958 gagtatgagaaagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 26026896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 18550113 - 18550158
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatt 59  Q
    |||||||||  ||||||||| | |||||||||||||||||||||||    
T  18550113 aaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcatt 18550158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 42651054 - 42651099
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatt 59  Q
    |||||||||  ||||||||| | |||||||||||||||||||||||    
T  42651054 aaggttgtctcaaaagttgtaccaaaatagttgttcaaatatcatt 42651099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 67172 - 67232
Alignment:
Q  3 gtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||| | |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  67172 gtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 67232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 10644822 - 10644874
Alignment:
Q  12 agaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctcg 64  Q
    |||| ||||||| ||||||||||  ||||| ||||| ||||||||||||||||    
T  10644822 agaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctcg 10644874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18651432 - 18651368
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctcgc 65  Q
    |||||||| | ||||  |||||| ||||||||||   |||||| |||||||||||||||||||||    
T  18651432 gagtatgagagagaaaattgtcacaaaagttgttaccaaatagatgttcaaatatcatttctcgc 18651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 20284839 - 20284887
Alignment:
Q  12 agaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcattt 60  Q
    |||||||||||| |||||||||  | |||| ||||||||||||||||||    
T  20284839 agaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcattt 20284887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 21071468 - 21071516
Alignment:
Q  12 agaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcattt 60  Q
    |||||||||||| |||||||||  | |||| ||||||||||||||||||    
T  21071468 agaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcattt 21071516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34008242 - 34008180
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| |||||| ||||||| |||||||||  |||||||| |||||||||||||||||||    
T  34008242 gagtatgagatagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 34008180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1689453 - 1689391
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  1689453 gagtatgagagagaaagttgtcacaaaaattgttataaaatagttgtacaaatatcatttctc 1689391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32915081 - 32915143
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||||| |||||||||||||||||||    
T  32915081 gagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 32915143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33076181 - 33076119
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||||| |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  33076181 gagtatgatagagaaagttgtcataaaagttgttagaaaatggttgtacaaatatcatttctc 33076119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47214270 - 47214208
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||||| |||||||||||||||||||    
T  47214270 gagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 47214208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 649830 - 649768
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  649830 gagtatgagagagaaagttgtcacaaaagttgtaaaaaaatggttgttcaaatatcatttctc 649768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9566970 - 9567032
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  9566970 gagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 9567032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10890055 - 10890117
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  10890055 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 10890117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13489724 - 13489662
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  13489724 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 13489662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15705071 - 15705133
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  15705071 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 15705133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48983677 - 48983739
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  48983677 gagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 48983739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 51286376 - 51286438
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||||  |||||||||||||||||||    
T  51286376 gagtatgagagagaaagttgtcacaaaagttgtcataaaataaatgttcaaatatcatttctc 51286438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 52362544 - 52362482
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  52362544 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 52362482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 52714910 - 52714972
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | ||||  |||||| |||||||||| |||||| | |||||||||||||||||||    
T  52714910 gagtatgagaaagaaaattgtcacaaaagttgttataaaatggatgttcaaatatcatttctc 52714972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 8905788 - 8905728
Alignment:
Q  2 agtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||| |||||| ||||||| ||| ||||||  ||||||||||| |||||||||||||||    
T  8905788 agtatgagatagaaagttgtca-aaaggttgttaaaaaatagttgtacaaatatcatttctc 8905728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 11947856 - 11947795
Alignment:
Q  2 agtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||| | |||| ||||||| |||||||||  |||||| ||||| |||||||||||||||    
T  11947856 agtatgagagagaaagttgtcacaaaagttgtcataaaatggttgtacaaatatcatttctc 11947795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 50875566 - 50875611
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatt 59  Q
    |||||||||  |||||||||  ||||||||||||||||||||||||    
T  50875566 aaggttgtcttaaaagttgtattaaaatagttgttcaaatatcatt 50875611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 1100351 - 1100391
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaata 54  Q
    |||||||||| ||||||||| |||||| |||||||||||||    
T  1100351 aaggttgtcacaaaagttgtactaaaagagttgttcaaata 1100391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 32966402 - 32966446
Alignment:
Q  15 aggttgtcagaaaagttgttctaaaatagttgttcaaatatcatt 59  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||    
T  32966402 aggttgtcacaaaagttgttagtaaatagttgttcaaatatcatt 32966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 33466110 - 33466066
Alignment:
Q  17 gttgtcagaaaagttgttctaaaatagttgttcaaatatcatttc 61  Q
    ||||||| | ||||||||  |||||||||||||||||||||||||    
T  33466110 gttgtcacataagttgtttaaaaatagttgttcaaatatcatttc 33466066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24468295 - 24468357
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| |||||| ||| ||| ||||||||||  ||||| |||||||||||||||||||||    
T  24468295 gagtatgagatagaaagttatcacaaaagttgtttaaaaatggttgttcaaatatcatttctc 24468357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4088505 - 4088443
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||| |||||| | ||| |||||||||||||||    
T  4088505 gagtatgaaagagaaagttgtcacaaaagttgttataaaatggatgtacaaatatcatttctc 4088443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6517774 - 6517712
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  6517774 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6517712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13089791 - 13089853
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  13089791 gagtatgaaagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 13089853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14011379 - 14011317
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||| ||| |||||| ||||||| ||||||||||  |||||  ||||||||||||||||||||    
T  14011379 gagtgtgaaatagaaagttgtcacaaaagttgttacaaaatgattgttcaaatatcatttctc 14011317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18695380 - 18695318
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  18695380 gagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 18695318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22098317 - 22098255
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  22098317 gagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 22098255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31708431 - 31708370
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||| |||||| ||||| |||||||||||||||    
T  31708431 gagtatgagagagaaagttgtca-aaaagttgttataaaatggttgtacaaatatcatttctc 31708370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32872907 - 32872969
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | ||||  |||||| |||||||||   |||||||||||||||||||||||||||    
T  32872907 gagtatgaaaaagaaaattgtcacaaaagttgtcaaaaaatagttgttcaaatatcatttctc 32872969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38293368 - 38293430
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||||| |||| ||||||| |||| ||||| |||||| |||||  ||||||||||||||    
T  38293368 gagtatgatagagaaagttgtcacaaaaattgttataaaatggttgtaaaaatatcatttctc 38293430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40364630 - 40364568
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||| |||||||| ||| || ||||||||||||    
T  40364630 gagtatgagagagaaagttgtcataaaagttgttataaaatagctgtacagatatcatttctc 40364568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41175715 - 41175777
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||| | | ||||||| |||||||||||||||||||    
T  41175715 gagtatgagagagaaagttgtcacaaaagttatcccaaaatagatgttcaaatatcatttctc 41175777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10649497 - 10649436
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttct 62  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | ||||||||||||||||||    
T  10649497 gagtatgaaagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttct 10649436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 17574161 - 17574116
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatt 59  Q
    |||||||||  ||||||||| | |||||||||||||||||||||||    
T  17574161 aaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcatt 17574116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31329136 - 31329196
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttct 62  Q
    |||||||||| |||| ||||||| |||||||||| |||| | ||||| ||||||||||||||    
T  31329136 gagtatgatagagaaagttgtca-aaaagttgttataaagtggttgtgcaaatatcatttct 31329196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 43214085 - 43214130
Alignment:
Q  18 ttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||| ||||||||||  ||||||| |||||||||||||||||||    
T  43214085 ttgtcacaaaagttgttgcaaaatagatgttcaaatatcatttctc 43214130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42815466 - 42815404
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||||||||| |||||||||||||||    
T  42815466 gagtatgagagagaaagttgtcacaaaagttgttacaaaatagttgtacaaatatcatttctc 42815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42916712 - 42916653
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcattt 60  Q
    |||||||| | |||| |||| || |||||||||| |||||| ||||||||||||||||||    
T  42916712 gagtatgagaaagaaagttgacacaaaagttgttataaaatggttgttcaaatatcattt 42916653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2256339 - 2256401
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||||| |||| ||||||| |||||||||  | |||||| ||||||| |||||||||||    
T  2256339 gagtatgatagagaaagttgtcacaaaagttgtcatcaaatagatgttcaattatcatttctc 2256401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 7654215 - 7654253
Alignment:
Q  27 aagttgttctaaaatagttgttcaaatatcatttctcgc 65  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  7654215 aagttgttataaaatagatgttcaaatatcatttctcgc 7654253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10250525 - 10250586
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   |||||||||||||||||||||||||||    
T  10250525 gagtatgagagagaaagttgtcacaaaagttgtaa-aaaatagttgttcaaatatcatttctc 10250586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12241119 - 12241058
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||||||||| |||||||||||||||    
T  12241119 gagtatgagagagaaagttgtca-aaaagttgttagaaaatagttgtacaaatatcatttctc 12241058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 20118819 - 20118781
Alignment:
Q  25 aaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  20118819 aaaagttgttataaaatggttgttcaaatatcatttctc 20118781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30170029 - 30170091
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||||| ||||||||||| |||||||    
T  30170029 gagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatataatttctc 30170091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33820346 - 33820407
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||||||||| |||||||||||||||    
T  33820346 gagtatgagagagaaagttgtca-aaaagttgttagaaaatagttgtacaaatatcatttctc 33820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 46212996 - 46212958
Alignment:
Q  37 aaaatagttgttcaaatatcatttctcgccctatatata 75  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  46212996 aaaatagttgttcaaatatcatttctcttcctatatata 46212958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 50890083 - 50890144
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||| | ||||||||||| |||||||||||||||    
T  50890083 gagtatgagagagaaagttgtcacaaaagttgt-caaaaatagttgtacaaatatcatttctc 50890144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51255808 - 51255746
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||| |||||||||||||||||||||    
T  51255808 gagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 51255746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 51734642 - 51734704
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||| | |||||||||||||||||||||    
T  51734642 gagtatgagagagaaagttgtcacaaaagttgtttaaaagtggttgttcaaatatcatttctc 51734704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 56557795 - 56557733
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | ||||  |||||| |||||||||  |||||| |||||||||||||||||||||    
T  56557795 gagtatgagagagaaaattgtcacaaaagttgtcataaaattgttgttcaaatatcatttctc 56557733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 36123470 - 36123531
Alignment:
Q  2 agtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||| | |||| ||||||| |||||||||| ||||||  |||| |||||||||||||||    
T  36123470 agtatgagagagaaagttgtcataaaagttgttataaaatgattgtacaaatatcatttctc 36123531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 4949265 - 4949305
Alignment:
Q  23 agaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||||||| | ||||||||||| |||||||||||||||    
T  4949265 agaaaagttgtaccaaaatagttgtacaaatatcatttctc 4949305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10811197 - 10811135
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| |||||||||||||||||||||    
T  10811197 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 10811135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14207267 - 14207329
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  14207267 gagtatgagagagaaagttgtcacaaaagttgttacaaaatcgttgttcaaatatcatttctc 14207329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14215015 - 14215077
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  14215015 gagtatgagagagaaagttgtcacaaaagttgttacaaaatcgttgttcaaatatcatttctc 14215077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45293038 - 45293100
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  |||||||||||| ||||||||||||||    
T  45293038 gagtatgagagagaaagttgtcacaaaagttgtttaaaaatagttgtttaaatatcatttctc 45293100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 49417637 - 49417575
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||||| |||||||||||||||||||    
T  49417637 gagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 49417575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 53715450 - 53715499
Alignment:
Q  15 aggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctcg 64  Q
    ||||||||| |||||||||| | |||||||||||||||||||||| ||||    
T  53715450 aggttgtcataaaagttgttatcaaatagttgttcaaatatcattcctcg 53715499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 23553614 - 23553660
Alignment:
Q  17 gttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||| ||||||||||  ||| |||||||||||||||||||||||    
T  23553614 gttgtcacaaaagttgtttaaaagtagttgttcaaatatcatttctc 23553660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29573365 - 29573427
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  29573365 gagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 29573427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37894252 - 37894314
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  37894252 gagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 37894314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39629848 - 39629906
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatt 59  Q
    |||||||| | |||||||||||| |||||||||   ||||||||||| |||||||||||    
T  39629848 gagtatgagagagaaggttgtcacaaaagttgtaaaaaaatagttgtacaaatatcatt 39629906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 46019524 - 46019462
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||||| |||||||||||||||||||    
T  46019524 gagtatgagagagaaagttgtcacaaaagttgtcgcaaaatagatgttcaaatatcatttctc 46019462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 55400061 - 55399999
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  55400061 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 55399999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2935448 - 2935408
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaata 54  Q
    |||||||||| ||||||||| |||||| |||||||||||||    
T  2935448 aaggttgtcacaaaagttgtactaaaagagttgttcaaata 2935408  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47988495 - 47988554
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttc 61  Q
    |||||||| | |||| ||||||| ||||||||||  ||||||||||| |||||||||||||    
T  47988495 gagtatgagagagaaagttgtca-aaaagttgttagaaaatagttgtacaaatatcatttc 47988554  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47997782 - 47997841
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttc 61  Q
    |||||||| | |||| ||||||| ||||||||||  ||||||||||| |||||||||||||    
T  47997782 gagtatgagagagaaagttgtca-aaaagttgttagaaaatagttgtacaaatatcatttc 47997841  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48007069 - 48007128
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttc 61  Q
    |||||||| | |||| ||||||| ||||||||||  ||||||||||| |||||||||||||    
T  48007069 gagtatgagagagaaagttgtca-aaaagttgttagaaaatagttgtacaaatatcatttc 48007128  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 48205179 - 48205219
Alignment:
Q  14 aaggttgtcagaaaagttgttctaaaatagttgttcaaata 54  Q
    |||||||||| ||||||||| |||||| |||||||||||||    
T  48205179 aaggttgtcacaaaagttgtactaaaagagttgttcaaata 48205219  T

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Target: scaffold0532 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11026 - 10964
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||| | ||||| | |||||||||||||||||||    
T  11026 gagtatgagagagaaagttgtcacaaaagttgtcccaaaatggatgttcaaatatcatttctc 10964  T

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Target: scaffold0299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 18831 - 18869
Alignment:
Q  25 aaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  18831 aaaagttgttccaaaatagttgttcaaatatcatatctc 18869  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 30574 - 30536
Alignment:
Q  25 aaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  30574 aaaagttgttccaaaatagttgttcaaatatcatatctc 30536  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6336314 - 6336252
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| ||||||||||  ||||| ||||| |||||||||||||||    
T  6336314 gagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 6336252  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6999077 - 6999139
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  6999077 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6999139  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 7438614 - 7438568
Alignment:
Q  17 gttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  7438614 gttgtcataaaagttgtttaaaaatggttgttcaaatatcatttctc 7438568  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13765462 - 13765400
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||  |||||| | |||||||||||||||||||    
T  13765462 gagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 13765400  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14877019 - 14876957
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   |||||||||||||| ||||||||||||    
T  14877019 gagtatgagagagaaagttgtcacaaaagttgtcaaaaaatagttgttcacatatcatttctc 14876957  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28245790 - 28245728
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||||||||   ||||||| |||||||||||||||||||    
T  28245790 gagtatgagagagaaagttgtcacaaaagttgtcgcaaaatagatgttcaaatatcatttctc 28245728  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38821428 - 38821366
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | ||||  |||||| |||||||||  |||||| |||||||||||||||||||||    
T  38821428 gagtatgagaaagaaaattgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 38821366  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40210077 - 40210139
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||| ||||||| |||| || ||  |||||||||||||||||||||||||||    
T  40210077 gagtatgagagagaaagttgtcacaaaaattatttaaaaatagttgttcaaatatcatttctc 40210139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44050077 - 44050015
Alignment:
Q  1 gagtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    |||||||| | |||||||||||| |||||||||  |||||| ||||| ||| |||||||||||    
T  44050077 gagtatgagagagaaggttgtcacaaaagttgtcataaaatggttgtacaagtatcatttctc 44050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 7664079 - 7664140
Alignment:
Q  2 agtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||| |||||| ||| ||| |||| |||| | |||||| ||||||||||||||||||||    
T  7664079 agtatgagatagaaagttatcacaaaaattgtccaaaaataattgttcaaatatcatttctc 7664140  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 34134781 - 34134842
Alignment:
Q  2 agtatgatatagaaggttgtcagaaaagttgttctaaaatagttgttcaaatatcatttctc 63  Q
    ||||||| | |||| ||||||||||||||||||  ||||| |||||  ||||||||||||||    
T  34134781 agtatgagagagaaagttgtcagaaaagttgttacaaaatggttgtaaaaatatcatttctc 34134842  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 20507620 - 20507656
Alignment:
Q  25 aaaagttgttctaaaatagttgttcaaatatcatttc 61  Q
    ||||||| || ||||||||||||||||||||||||||    
T  20507620 aaaagttattataaaatagttgttcaaatatcatttc 20507656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 171925 - 171884
Alignment:
Q  102 atttatatatgaatatttcgacaattcataggaattgcttta 143  Q
    |||| ||||||||||||| |||||||||||||||||| ||||    
T  171925 atttttatatgaatattttgacaattcataggaattgtttta 171884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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