View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_343 (Length: 234)
Name: NF9913A_low_343
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_343 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 6481956 - 6481763
Alignment:
| Q |
21 |
aactacatgaaataaatttgatttgaaagataatactgtattaacatagaaaattaaaatttctgtattattttctcctgacaattgtgaacctgactca |
120 |
Q |
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| T |
6481956 |
aactacatgatataaatttgatttgaaagataatattgtattaacatagaaaattaaaatttttgtattattttctcctgacaattgtgaacctgactca |
6481857 |
T |
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| Q |
121 |
aac-ctttatcaatcgcattaaggaaaaagaccttgtgccaaataccctactcattttttcttgtctaaacatctttccttgcaacaccaaagt |
213 |
Q |
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| T |
6481856 |
aacgatttatcaatcgcattaaggaaaaagaccttgtgtcaaataccctacttattttttcttgtctaaacatctttccttgcaacaccaaagt |
6481763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 44190437 - 44190237
Alignment:
| Q |
21 |
aactacatgaaataaatttgatttgaaagataatactgtattaacatagaaaattaaaatttctgtattattttctcctgacaattgtgaacctgactca |
120 |
Q |
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|||||||||| | ||||||| |||| ||| |||| ||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||| |
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| T |
44190437 |
aactacatgatacaaatttggcttgagagacaatattgtattaacatagaaaattaaaatttcggaattattttctcctaaacattgtgaacctgactca |
44190338 |
T |
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| Q |
121 |
aac-ctttatcaatcgcattaaggaaaaagaccttgtgccaaataccctact-------cattttttcttgtctaaacatctttccttgcaacaccaaag |
212 |
Q |
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||| ||||||||||||||||| ||||||||||| | |||||||||| || |||||||||||||||||||||||||||||||||||| ||| |
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| T |
44190337 |
aacgagttatcaatcgcattaagacaaaagaccttgcgtcaaataccctcctacttctcaattttttcttgtctaaacatctttccttgcaacacctaag |
44190238 |
T |
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| Q |
213 |
t |
213 |
Q |
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| T |
44190237 |
t |
44190237 |
T |
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