View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9913A_low_348 (Length: 232)
Name: NF9913A_low_348
Description: NF9913A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9913A_low_348 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 28411322 - 28411098
Alignment:
| Q |
8 |
ttggtgttagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaattgttgataacaatcttgttctgcatacatctatctctt |
107 |
Q |
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| T |
28411322 |
ttggtattagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaattgtcgataacaatcttgttctgcatacatctatctctt |
28411223 |
T |
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| Q |
108 |
gctagtatttcctgctcaatgtagctctctcatatatgtcatcgtctgacatcgatacatgcggttatactcaaatatttccactttttcaaattattac |
207 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411222 |
gctagtatttcctgctcaatgtagcactctcatatatgtcatcgtctgacatcgatacatgcggttatactcaaatatttccactttttcaaattattac |
28411123 |
T |
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| Q |
208 |
cagcaaccacatatcagtgtcatgt |
232 |
Q |
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| T |
28411122 |
cagcaaccacatatcagtgtcatgt |
28411098 |
T |
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